miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 103983 0.66 0.780253
Target:  5'- -gAGGGCCGCCGcggacgccgugggGGUagacaacaugGCCUGu-GCCCa -3'
miRNA:   3'- cgUCCCGGCGGU-------------UCG----------UGGAUucUGGG- -5'
27170 5' -57.2 NC_005832.1 + 72297 0.66 0.771712
Target:  5'- cCAGGGgCGaCCAGGgGCCgcaagGAGACa- -3'
miRNA:   3'- cGUCCCgGC-GGUUCgUGGa----UUCUGgg -5'
27170 5' -57.2 NC_005832.1 + 91318 0.66 0.771712
Target:  5'- aGCuuGGCCaugacgGCCGAGUagucugcgaGCCUGGuGACCCu -3'
miRNA:   3'- -CGucCCGG------CGGUUCG---------UGGAUU-CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 49370 0.66 0.771712
Target:  5'- gGCGuGcGCCGCCAuGUcccGCCUGaccuccucGGACCCu -3'
miRNA:   3'- -CGUcC-CGGCGGUuCG---UGGAU--------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 67547 0.66 0.7621
Target:  5'- --uGGGCCcuGCCGuuuGGgACC-AGGACCCc -3'
miRNA:   3'- cguCCCGG--CGGU---UCgUGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 43174 0.66 0.771712
Target:  5'- -aAGGGCCuGCCGGGCuuCUuuGAGGgcgcuCCCg -3'
miRNA:   3'- cgUCCCGG-CGGUUCGugGA--UUCU-----GGG- -5'
27170 5' -57.2 NC_005832.1 + 70350 0.66 0.771712
Target:  5'- aCAGGGCCGUa---CACCU-AGACUa -3'
miRNA:   3'- cGUCCCGGCGguucGUGGAuUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 71166 0.66 0.771712
Target:  5'- cGgAGaGGCCGUCAGGCcguCC-GAG-CCCg -3'
miRNA:   3'- -CgUC-CCGGCGGUUCGu--GGaUUCuGGG- -5'
27170 5' -57.2 NC_005832.1 + 9340 0.66 0.781195
Target:  5'- cUAGGGuguccucguCCGCCGGGUuccACCUAcGGCCg -3'
miRNA:   3'- cGUCCC---------GGCGGUUCG---UGGAUuCUGGg -5'
27170 5' -57.2 NC_005832.1 + 54807 0.66 0.7621
Target:  5'- -aAGGGCCGaCGggGGgACCguccuGGACCCc -3'
miRNA:   3'- cgUCCCGGCgGU--UCgUGGau---UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 10814 0.66 0.756274
Target:  5'- aGguGGGUCauGCCGgugccucccAGCACCUccccggcaaaggucAGACCCg -3'
miRNA:   3'- -CguCCCGG--CGGU---------UCGUGGAu-------------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 78353 0.66 0.752368
Target:  5'- cGCGGcGGCCGUgCAGGacaGCCUcguucacgucGACCCa -3'
miRNA:   3'- -CGUC-CCGGCG-GUUCg--UGGAuu--------CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 91469 0.66 0.752368
Target:  5'- gGCAGGGUCaCCAGGC-UCgcAGACUa -3'
miRNA:   3'- -CGUCCCGGcGGUUCGuGGauUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 42605 0.66 0.79054
Target:  5'- gGCGGagacGCUGCgGAGCACCUGGGGu-- -3'
miRNA:   3'- -CGUCc---CGGCGgUUCGUGGAUUCUggg -5'
27170 5' -57.2 NC_005832.1 + 51744 0.66 0.79054
Target:  5'- ---aGGCCGCCuGAGCcauACCcAGGGCCUc -3'
miRNA:   3'- cgucCCGGCGG-UUCG---UGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 33594 0.66 0.799737
Target:  5'- -gAGGGUCGCCGcgGGCAagauAGGCuCCa -3'
miRNA:   3'- cgUCCCGGCGGU--UCGUggauUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 19730 0.66 0.752368
Target:  5'- -gGGGGaCCGUCAGGC-CCaGGGGCUUu -3'
miRNA:   3'- cgUCCC-GGCGGUUCGuGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 89296 0.66 0.752368
Target:  5'- cCAGuauaGCCuCCAGGCACUUGAcGACCUg -3'
miRNA:   3'- cGUCc---CGGcGGUUCGUGGAUU-CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 55653 0.66 0.781195
Target:  5'- cGCAuGGaCCGCCGuGUcguCCUuauAGGCCCa -3'
miRNA:   3'- -CGUcCC-GGCGGUuCGu--GGAu--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 50779 0.66 0.752368
Target:  5'- cGCcccuGGGUC-CCAcGCGCCUGacuGGACCg -3'
miRNA:   3'- -CGu---CCCGGcGGUuCGUGGAU---UCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.