miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 74573 0.66 0.760162
Target:  5'- cCAGGcCCGUCAGGUACUUuagccucuuuacGGACCCc -3'
miRNA:   3'- cGUCCcGGCGGUUCGUGGAu-----------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 10991 0.66 0.758221
Target:  5'- uCAaGGCCGCCAGGC-CCgacgcgggucuGACCUu -3'
miRNA:   3'- cGUcCCGGCGGUUCGuGGauu--------CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 101879 0.66 0.752368
Target:  5'- -gAGGGCCGggAAGgGCUU-GGACCCc -3'
miRNA:   3'- cgUCCCGGCggUUCgUGGAuUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 51744 0.66 0.79054
Target:  5'- ---aGGCCGCCuGAGCcauACCcAGGGCCUc -3'
miRNA:   3'- cgucCCGGCGG-UUCG---UGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 7411 0.66 0.7621
Target:  5'- aCAGGaCCGCCGc-CGCgUAGGACCUu -3'
miRNA:   3'- cGUCCcGGCGGUucGUGgAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 62423 0.66 0.752368
Target:  5'- cGCAaGGCUcCCGAGgACCaGAGGCCg -3'
miRNA:   3'- -CGUcCCGGcGGUUCgUGGaUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 28172 0.66 0.771712
Target:  5'- aCAGGGCCugaGCCAcGGUACCcccacuACCCu -3'
miRNA:   3'- cGUCCCGG---CGGU-UCGUGGauuc--UGGG- -5'
27170 5' -57.2 NC_005832.1 + 42605 0.66 0.79054
Target:  5'- gGCGGagacGCUGCgGAGCACCUGGGGu-- -3'
miRNA:   3'- -CGUCc---CGGCGgUUCGUGGAUUCUggg -5'
27170 5' -57.2 NC_005832.1 + 55653 0.66 0.781195
Target:  5'- cGCAuGGaCCGCCGuGUcguCCUuauAGGCCCa -3'
miRNA:   3'- -CGUcCC-GGCGGUuCGu--GGAu--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 29421 0.66 0.781195
Target:  5'- aGCAGua-CGCacgaGAGCGCC-GGGACCCu -3'
miRNA:   3'- -CGUCccgGCGg---UUCGUGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 54113 0.66 0.7621
Target:  5'- cCAGGGCCaugaaggucuuGCCGaagccgggagGGCACUUGAGcaugcaguACCCc -3'
miRNA:   3'- cGUCCCGG-----------CGGU----------UCGUGGAUUC--------UGGG- -5'
27170 5' -57.2 NC_005832.1 + 80558 0.66 0.79054
Target:  5'- -gGGGGCauggGCCAAGuCACCaggguaaAGGAUCCc -3'
miRNA:   3'- cgUCCCGg---CGGUUC-GUGGa------UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 98305 0.66 0.7621
Target:  5'- cGguGGGCCugaGCCu-GU-CCUGGGGCCa -3'
miRNA:   3'- -CguCCCGG---CGGuuCGuGGAUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 56614 0.66 0.7621
Target:  5'- -aGGGGagaUGCCAAG-GCCUcGGGCCUg -3'
miRNA:   3'- cgUCCCg--GCGGUUCgUGGAuUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 56278 0.66 0.752368
Target:  5'- cCAcGGCCGUCAAGCuCCagGAGACgCu -3'
miRNA:   3'- cGUcCCGGCGGUUCGuGGa-UUCUGgG- -5'
27170 5' -57.2 NC_005832.1 + 36141 0.66 0.752368
Target:  5'- aGCucGGCCGUCAGGCcCuCUAGGcacuacaacGCCCc -3'
miRNA:   3'- -CGucCCGGCGGUUCGuG-GAUUC---------UGGG- -5'
27170 5' -57.2 NC_005832.1 + 10955 0.66 0.771712
Target:  5'- cCGGGGaggUGCUgggAGGCACCggcauGACCCa -3'
miRNA:   3'- cGUCCCg--GCGG---UUCGUGGauu--CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 78732 0.66 0.771712
Target:  5'- -aGGGGCacgaGCCGgugGGCGCCgcAGAgUCCa -3'
miRNA:   3'- cgUCCCGg---CGGU---UCGUGGauUCU-GGG- -5'
27170 5' -57.2 NC_005832.1 + 11938 0.66 0.771712
Target:  5'- aGCccGGCCagaGCCAgGGCACCUuc-ACCCu -3'
miRNA:   3'- -CGucCCGG---CGGU-UCGUGGAuucUGGG- -5'
27170 5' -57.2 NC_005832.1 + 91469 0.66 0.752368
Target:  5'- gGCAGGGUCaCCAGGC-UCgcAGACUa -3'
miRNA:   3'- -CGUCCCGGcGGUUCGuGGauUCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.