miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 54113 0.66 0.7621
Target:  5'- cCAGGGCCaugaaggucuuGCCGaagccgggagGGCACUUGAGcaugcaguACCCc -3'
miRNA:   3'- cGUCCCGG-----------CGGU----------UCGUGGAUUC--------UGGG- -5'
27170 5' -57.2 NC_005832.1 + 7411 0.66 0.7621
Target:  5'- aCAGGaCCGCCGc-CGCgUAGGACCUu -3'
miRNA:   3'- cGUCCcGGCGGUucGUGgAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 11938 0.66 0.771712
Target:  5'- aGCccGGCCagaGCCAgGGCACCUuc-ACCCu -3'
miRNA:   3'- -CGucCCGG---CGGU-UCGUGGAuucUGGG- -5'
27170 5' -57.2 NC_005832.1 + 19730 0.66 0.752368
Target:  5'- -gGGGGaCCGUCAGGC-CCaGGGGCUUu -3'
miRNA:   3'- cgUCCC-GGCGGUUCGuGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 91469 0.66 0.752368
Target:  5'- gGCAGGGUCaCCAGGC-UCgcAGACUa -3'
miRNA:   3'- -CGUCCCGGcGGUUCGuGGauUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 72297 0.66 0.771712
Target:  5'- cCAGGGgCGaCCAGGgGCCgcaagGAGACa- -3'
miRNA:   3'- cGUCCCgGC-GGUUCgUGGa----UUCUGgg -5'
27170 5' -57.2 NC_005832.1 + 39215 0.66 0.799737
Target:  5'- -uGGGGUC-CCGgacGGCccuCCUGGGAUCCg -3'
miRNA:   3'- cgUCCCGGcGGU---UCGu--GGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 33085 0.66 0.79054
Target:  5'- cCGGGGUgGCCGuccAGUuCCUGauGGGCCUc -3'
miRNA:   3'- cGUCCCGgCGGU---UCGuGGAU--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 20832 0.66 0.79054
Target:  5'- cCAGGGCgGCCucGUACuCUGcucccGAUCCg -3'
miRNA:   3'- cGUCCCGgCGGuuCGUG-GAUu----CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 27861 0.67 0.702259
Target:  5'- -aGGaGGCgGCCGGGCAggcCCU-GGACCUc -3'
miRNA:   3'- cgUC-CCGgCGGUUCGU---GGAuUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 91371 0.67 0.732586
Target:  5'- gGCGGcGGUaaaGUCGuAGCGCCUAaagaacacGGACCUg -3'
miRNA:   3'- -CGUC-CCGg--CGGU-UCGUGGAU--------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 87228 0.67 0.722554
Target:  5'- aCAGGGCCaCCcucacccugGAGaGCCUGAGGgCCa -3'
miRNA:   3'- cGUCCCGGcGG---------UUCgUGGAUUCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 8123 0.67 0.712442
Target:  5'- aGCAGGGCgGCCuucgagGAGUcCCUAgauauccugacgGGAgCCg -3'
miRNA:   3'- -CGUCCCGgCGG------UUCGuGGAU------------UCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 81135 0.67 0.702259
Target:  5'- aGgAGGGCCGUCGuagacugggaacGGgGCCUugcGGugCCg -3'
miRNA:   3'- -CgUCCCGGCGGU------------UCgUGGAu--UCugGG- -5'
27170 5' -57.2 NC_005832.1 + 100301 0.67 0.712442
Target:  5'- cCGGGGuCCGgCAAGUccacCCUGaucaAGGCCCu -3'
miRNA:   3'- cGUCCC-GGCgGUUCGu---GGAU----UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 39936 0.67 0.742527
Target:  5'- cCAGGcGCCccGCUAGG-ACCgguuGGACCCa -3'
miRNA:   3'- cGUCC-CGG--CGGUUCgUGGau--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 15949 0.68 0.671381
Target:  5'- aCAGGGCCuCUugGAGCGCCUcu--CCCg -3'
miRNA:   3'- cGUCCCGGcGG--UUCGUGGAuucuGGG- -5'
27170 5' -57.2 NC_005832.1 + 98353 0.68 0.671381
Target:  5'- uCGGGGCUGCCAugauCACCaGGGACa- -3'
miRNA:   3'- cGUCCCGGCGGUuc--GUGGaUUCUGgg -5'
27170 5' -57.2 NC_005832.1 + 36397 0.68 0.675521
Target:  5'- cGCAGaGGCCGCCGcgaggguccucuccaAGUacgGCCUcAAGGUCCg -3'
miRNA:   3'- -CGUC-CCGGCGGU---------------UCG---UGGA-UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 89851 0.68 0.68172
Target:  5'- uGCAacGcGCUGCCGGGCAUCaAGGACgCCg -3'
miRNA:   3'- -CGU--CcCGGCGGUUCGUGGaUUCUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.