miRNA display CGI


Results 81 - 100 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 102096 0.69 0.629788
Target:  5'- -uGGaGGCCGCCGAGgcaGCCauGGACgCCa -3'
miRNA:   3'- cgUC-CCGGCGGUUCg--UGGauUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 79718 0.69 0.608968
Target:  5'- aGCAGGGUacgaaaggguacuugGCCuuguugggGAGCAgguuggcCCUGAGGCCCg -3'
miRNA:   3'- -CGUCCCGg--------------CGG--------UUCGU-------GGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 97115 0.69 0.588219
Target:  5'- aGCA-GGCCGCCGcgguGGC-CCUGAGGgCa -3'
miRNA:   3'- -CGUcCCGGCGGU----UCGuGGAUUCUgGg -5'
27170 5' -57.2 NC_005832.1 + 89433 0.7 0.526982
Target:  5'- gGCA-GGUCGUCAAGUGCCUgGAGGCUa -3'
miRNA:   3'- -CGUcCCGGCGGUUCGUGGA-UUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 94064 0.7 0.526982
Target:  5'- cGCcGuGGCgGCCcugauGUACUUGAGGCCCg -3'
miRNA:   3'- -CGuC-CCGgCGGuu---CGUGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 56131 0.7 0.567602
Target:  5'- cCAGGGCCGCguacggcuacgCGGGCcCCgugucuGGCCCa -3'
miRNA:   3'- cGUCCCGGCG-----------GUUCGuGGauu---CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 11687 0.7 0.566576
Target:  5'- aGgAGGGCCGuCCAGGacgacccCGCCUuuGGCCa -3'
miRNA:   3'- -CgUCCCGGC-GGUUC-------GUGGAuuCUGGg -5'
27170 5' -57.2 NC_005832.1 + 64130 0.71 0.497244
Target:  5'- uCAGGGa-GCCGGGUAUC-AGGGCCCu -3'
miRNA:   3'- cGUCCCggCGGUUCGUGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 15581 0.71 0.507077
Target:  5'- cGCAGGGUCGCCGgcguGguCCUAAuuGACgCu -3'
miRNA:   3'- -CGUCCCGGCGGUu---CguGGAUU--CUGgG- -5'
27170 5' -57.2 NC_005832.1 + 72725 0.71 0.477843
Target:  5'- cGCGgacGGGCCGUUggGCAagacgggucCCaGGGGCCCa -3'
miRNA:   3'- -CGU---CCCGGCGGuuCGU---------GGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 915 0.71 0.487498
Target:  5'- aGCAgGGGCCgGCCGAGUAUgUGucGGACUUg -3'
miRNA:   3'- -CGU-CCCGG-CGGUUCGUGgAU--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 40818 0.71 0.497244
Target:  5'- cCAGGGCCagGCCGG--ACCUGGGAgCCa -3'
miRNA:   3'- cGUCCCGG--CGGUUcgUGGAUUCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 42501 0.71 0.497244
Target:  5'- aGgAGGGCCGCCAuGC-UCUGgugguGGACCg -3'
miRNA:   3'- -CgUCCCGGCGGUuCGuGGAU-----UCUGGg -5'
27170 5' -57.2 NC_005832.1 + 5324 0.71 0.477843
Target:  5'- gGCGGGGUCGUCGuGCuCC-AGGGCCUu -3'
miRNA:   3'- -CGUCCCGGCGGUuCGuGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 48252 0.72 0.457882
Target:  5'- uGCAGGGCCcaGCCAguccuccAGCucaccaGCCUcaGGGACCUu -3'
miRNA:   3'- -CGUCCCGG--CGGU-------UCG------UGGA--UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 65768 0.72 0.413126
Target:  5'- --uGGGCaucaCCAAGUggaACCUGAGGCCCa -3'
miRNA:   3'- cguCCCGgc--GGUUCG---UGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 79890 0.72 0.422041
Target:  5'- -gAGGGCgGCCAug-GCCUcGGACCCu -3'
miRNA:   3'- cgUCCCGgCGGUucgUGGAuUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 24726 0.72 0.422041
Target:  5'- -aAGGGCCGCCc-GCugCUcagGAGAgCCa -3'
miRNA:   3'- cgUCCCGGCGGuuCGugGA---UUCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 54255 0.72 0.449465
Target:  5'- gGCAGGG-CGUCGggagggggAGCGCCggauguaAAGACCCu -3'
miRNA:   3'- -CGUCCCgGCGGU--------UCGUGGa------UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 50918 0.72 0.458822
Target:  5'- gGCcGGuCCaGUCAGGCGCgUGGGACCCa -3'
miRNA:   3'- -CGuCCcGG-CGGUUCGUGgAUUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.