Results 101 - 116 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 46664 | 0.72 | 0.449465 |
Target: 5'- gGC-GGGCUccaggaauGCCAGGCGCCUGcAGGCgCa -3' miRNA: 3'- -CGuCCCGG--------CGGUUCGUGGAU-UCUGgG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 54255 | 0.72 | 0.449465 |
Target: 5'- gGCAGGG-CGUCGggagggggAGCGCCggauguaAAGACCCu -3' miRNA: 3'- -CGUCCCgGCGGU--------UCGUGGa------UUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 24726 | 0.72 | 0.422041 |
Target: 5'- -aAGGGCCGCCc-GCugCUcagGAGAgCCa -3' miRNA: 3'- cgUCCCGGCGGuuCGugGA---UUCUgGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 81293 | 0.73 | 0.378656 |
Target: 5'- gGCAGGG--GCCAcGGCACCgcAAGGCCCc -3' miRNA: 3'- -CGUCCCggCGGU-UCGUGGa-UUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 50376 | 0.73 | 0.395649 |
Target: 5'- -aAGGGCCGCgGGG-ACCUGA-ACCCa -3' miRNA: 3'- cgUCCCGGCGgUUCgUGGAUUcUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 73081 | 0.73 | 0.378656 |
Target: 5'- -uGGGGuCCGUCGGG-ACCUAcgGGACCCu -3' miRNA: 3'- cgUCCC-GGCGGUUCgUGGAU--UCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 7915 | 0.73 | 0.395649 |
Target: 5'- cCGGGaguGCCGCCGAccuGCACCgaaaaGAGACCUg -3' miRNA: 3'- cGUCC---CGGCGGUU---CGUGGa----UUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 72841 | 0.74 | 0.354101 |
Target: 5'- aCAGGGUCugggGCCuGAGCGCCcucAGGGCCCa -3' miRNA: 3'- cGUCCCGG----CGG-UUCGUGGa--UUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 65450 | 0.74 | 0.34617 |
Target: 5'- uGCAGGGCCuCCAGcuGCGCCcu-GACCa -3' miRNA: 3'- -CGUCCCGGcGGUU--CGUGGauuCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 36674 | 0.75 | 0.308444 |
Target: 5'- aGCAGGuaCGCCAAcGC-CCUGuGGCCCc -3' miRNA: 3'- -CGUCCcgGCGGUU-CGuGGAUuCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 26596 | 0.75 | 0.301285 |
Target: 5'- gGCgAGGGCCGCCGGGUGgCU---GCCCg -3' miRNA: 3'- -CG-UCCCGGCGGUUCGUgGAuucUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 94186 | 0.78 | 0.198708 |
Target: 5'- uCAGGGCCGCCAcggcguGCGCCUAuaucuuuCCCg -3' miRNA: 3'- cGUCCCGGCGGUu-----CGUGGAUucu----GGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 7231 | 0.78 | 0.184119 |
Target: 5'- cGCuGGucaCCGCCGGGgACCUGAGACCUg -3' miRNA: 3'- -CGuCCc--GGCGGUUCgUGGAUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 72779 | 0.78 | 0.193737 |
Target: 5'- --uGGGCCGUCGGGCcCCgcGGGCCCa -3' miRNA: 3'- cguCCCGGCGGUUCGuGGauUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 72881 | 0.81 | 0.124591 |
Target: 5'- uGUAGGGCCcuCUggGCcCCUGGGACCCg -3' miRNA: 3'- -CGUCCCGGc-GGuuCGuGGAUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 32371 | 1.14 | 0.000648 |
Target: 5'- gGCAGGGCCGCCAAGCACCUAAGACCCa -3' miRNA: 3'- -CGUCCCGGCGGUUCGUGGAUUCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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