miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 27861 0.67 0.702259
Target:  5'- -aGGaGGCgGCCGGGCAggcCCU-GGACCUc -3'
miRNA:   3'- cgUC-CCGgCGGUUCGU---GGAuUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 81135 0.67 0.702259
Target:  5'- aGgAGGGCCGUCGuagacugggaacGGgGCCUugcGGugCCg -3'
miRNA:   3'- -CgUCCCGGCGGU------------UCgUGGAu--UCugGG- -5'
27170 5' -57.2 NC_005832.1 + 8123 0.67 0.712442
Target:  5'- aGCAGGGCgGCCuucgagGAGUcCCUAgauauccugacgGGAgCCg -3'
miRNA:   3'- -CGUCCCGgCGG------UUCGuGGAU------------UCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 87228 0.67 0.722554
Target:  5'- aCAGGGCCaCCcucacccugGAGaGCCUGAGGgCCa -3'
miRNA:   3'- cGUCCCGGcGG---------UUCgUGGAUUCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 39936 0.67 0.742527
Target:  5'- cCAGGcGCCccGCUAGG-ACCgguuGGACCCa -3'
miRNA:   3'- cGUCC-CGG--CGGUUCgUGGau--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 91371 0.67 0.732586
Target:  5'- gGCGGcGGUaaaGUCGuAGCGCCUAaagaacacGGACCUg -3'
miRNA:   3'- -CGUC-CCGg--CGGU-UCGUGGAU--------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 100301 0.67 0.712442
Target:  5'- cCGGGGuCCGgCAAGUccacCCUGaucaAGGCCCu -3'
miRNA:   3'- cGUCCC-GGCgGUUCGu---GGAU----UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 29421 0.66 0.781195
Target:  5'- aGCAGua-CGCacgaGAGCGCC-GGGACCCu -3'
miRNA:   3'- -CGUCccgGCGg---UUCGUGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 55653 0.66 0.781195
Target:  5'- cGCAuGGaCCGCCGuGUcguCCUuauAGGCCCa -3'
miRNA:   3'- -CGUcCC-GGCGGUuCGu--GGAu--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 9340 0.66 0.781195
Target:  5'- cUAGGGuguccucguCCGCCGGGUuccACCUAcGGCCg -3'
miRNA:   3'- cGUCCC---------GGCGGUUCG---UGGAUuCUGGg -5'
27170 5' -57.2 NC_005832.1 + 72297 0.66 0.771712
Target:  5'- cCAGGGgCGaCCAGGgGCCgcaagGAGACa- -3'
miRNA:   3'- cGUCCCgGC-GGUUCgUGGa----UUCUGgg -5'
27170 5' -57.2 NC_005832.1 + 49370 0.66 0.771712
Target:  5'- gGCGuGcGCCGCCAuGUcccGCCUGaccuccucGGACCCu -3'
miRNA:   3'- -CGUcC-CGGCGGUuCG---UGGAU--------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 42605 0.66 0.79054
Target:  5'- gGCGGagacGCUGCgGAGCACCUGGGGu-- -3'
miRNA:   3'- -CGUCc---CGGCGgUUCGUGGAUUCUggg -5'
27170 5' -57.2 NC_005832.1 + 51744 0.66 0.79054
Target:  5'- ---aGGCCGCCuGAGCcauACCcAGGGCCUc -3'
miRNA:   3'- cgucCCGGCGG-UUCG---UGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 71166 0.66 0.771712
Target:  5'- cGgAGaGGCCGUCAGGCcguCC-GAG-CCCg -3'
miRNA:   3'- -CgUC-CCGGCGGUUCGu--GGaUUCuGGG- -5'
27170 5' -57.2 NC_005832.1 + 33594 0.66 0.799737
Target:  5'- -gAGGGUCGCCGcgGGCAagauAGGCuCCa -3'
miRNA:   3'- cgUCCCGGCGGU--UCGUggauUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 91318 0.66 0.771712
Target:  5'- aGCuuGGCCaugacgGCCGAGUagucugcgaGCCUGGuGACCCu -3'
miRNA:   3'- -CGucCCGG------CGGUUCG---------UGGAUU-CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 78353 0.66 0.752368
Target:  5'- cGCGGcGGCCGUgCAGGacaGCCUcguucacgucGACCCa -3'
miRNA:   3'- -CGUC-CCGGCG-GUUCg--UGGAuu--------CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 50779 0.66 0.752368
Target:  5'- cGCcccuGGGUC-CCAcGCGCCUGacuGGACCg -3'
miRNA:   3'- -CGu---CCCGGcGGUuCGUGGAU---UCUGGg -5'
27170 5' -57.2 NC_005832.1 + 89296 0.66 0.752368
Target:  5'- cCAGuauaGCCuCCAGGCACUUGAcGACCUg -3'
miRNA:   3'- cGUCc---CGGcGGUUCGUGGAUU-CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.