Results 101 - 116 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 9340 | 0.66 | 0.781195 |
Target: 5'- cUAGGGuguccucguCCGCCGGGUuccACCUAcGGCCg -3' miRNA: 3'- cGUCCC---------GGCGGUUCG---UGGAUuCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 29421 | 0.66 | 0.781195 |
Target: 5'- aGCAGua-CGCacgaGAGCGCC-GGGACCCu -3' miRNA: 3'- -CGUCccgGCGg---UUCGUGGaUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 55653 | 0.66 | 0.781195 |
Target: 5'- cGCAuGGaCCGCCGuGUcguCCUuauAGGCCCa -3' miRNA: 3'- -CGUcCC-GGCGGUuCGu--GGAu--UCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 67547 | 0.66 | 0.7621 |
Target: 5'- --uGGGCCcuGCCGuuuGGgACC-AGGACCCc -3' miRNA: 3'- cguCCCGG--CGGU---UCgUGGaUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 54807 | 0.66 | 0.7621 |
Target: 5'- -aAGGGCCGaCGggGGgACCguccuGGACCCc -3' miRNA: 3'- cgUCCCGGCgGU--UCgUGGau---UCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 36141 | 0.66 | 0.752368 |
Target: 5'- aGCucGGCCGUCAGGCcCuCUAGGcacuacaacGCCCc -3' miRNA: 3'- -CGucCCGGCGGUUCGuG-GAUUC---------UGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 62423 | 0.66 | 0.752368 |
Target: 5'- cGCAaGGCUcCCGAGgACCaGAGGCCg -3' miRNA: 3'- -CGUcCCGGcGGUUCgUGGaUUCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 101879 | 0.66 | 0.752368 |
Target: 5'- -gAGGGCCGggAAGgGCUU-GGACCCc -3' miRNA: 3'- cgUCCCGGCggUUCgUGGAuUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 91469 | 0.66 | 0.752368 |
Target: 5'- gGCAGGGUCaCCAGGC-UCgcAGACUa -3' miRNA: 3'- -CGUCCCGGcGGUUCGuGGauUCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 19730 | 0.66 | 0.752368 |
Target: 5'- -gGGGGaCCGUCAGGC-CCaGGGGCUUu -3' miRNA: 3'- cgUCCC-GGCGGUUCGuGGaUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 89296 | 0.66 | 0.752368 |
Target: 5'- cCAGuauaGCCuCCAGGCACUUGAcGACCUg -3' miRNA: 3'- cGUCc---CGGcGGUUCGUGGAUU-CUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 50779 | 0.66 | 0.752368 |
Target: 5'- cGCcccuGGGUC-CCAcGCGCCUGacuGGACCg -3' miRNA: 3'- -CGu---CCCGGcGGUuCGUGGAU---UCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 42605 | 0.66 | 0.79054 |
Target: 5'- gGCGGagacGCUGCgGAGCACCUGGGGu-- -3' miRNA: 3'- -CGUCc---CGGCGgUUCGUGGAUUCUggg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 78353 | 0.66 | 0.752368 |
Target: 5'- cGCGGcGGCCGUgCAGGacaGCCUcguucacgucGACCCa -3' miRNA: 3'- -CGUC-CCGGCG-GUUCg--UGGAuu--------CUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 10814 | 0.66 | 0.756274 |
Target: 5'- aGguGGGUCauGCCGgugccucccAGCACCUccccggcaaaggucAGACCCg -3' miRNA: 3'- -CguCCCGG--CGGU---------UCGUGGAu-------------UCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 51744 | 0.66 | 0.79054 |
Target: 5'- ---aGGCCGCCuGAGCcauACCcAGGGCCUc -3' miRNA: 3'- cgucCCGGCGG-UUCG---UGGaUUCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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