miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 32371 1.14 0.000648
Target:  5'- gGCAGGGCCGCCAAGCACCUAAGACCCa -3'
miRNA:   3'- -CGUCCCGGCGGUUCGUGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 72881 0.81 0.124591
Target:  5'- uGUAGGGCCcuCUggGCcCCUGGGACCCg -3'
miRNA:   3'- -CGUCCCGGc-GGuuCGuGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 7231 0.78 0.184119
Target:  5'- cGCuGGucaCCGCCGGGgACCUGAGACCUg -3'
miRNA:   3'- -CGuCCc--GGCGGUUCgUGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 72779 0.78 0.193737
Target:  5'- --uGGGCCGUCGGGCcCCgcGGGCCCa -3'
miRNA:   3'- cguCCCGGCGGUUCGuGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 94186 0.78 0.198708
Target:  5'- uCAGGGCCGCCAcggcguGCGCCUAuaucuuuCCCg -3'
miRNA:   3'- cGUCCCGGCGGUu-----CGUGGAUucu----GGG- -5'
27170 5' -57.2 NC_005832.1 + 26596 0.75 0.301285
Target:  5'- gGCgAGGGCCGCCGGGUGgCU---GCCCg -3'
miRNA:   3'- -CG-UCCCGGCGGUUCGUgGAuucUGGG- -5'
27170 5' -57.2 NC_005832.1 + 36674 0.75 0.308444
Target:  5'- aGCAGGuaCGCCAAcGC-CCUGuGGCCCc -3'
miRNA:   3'- -CGUCCcgGCGGUU-CGuGGAUuCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 65450 0.74 0.34617
Target:  5'- uGCAGGGCCuCCAGcuGCGCCcu-GACCa -3'
miRNA:   3'- -CGUCCCGGcGGUU--CGUGGauuCUGGg -5'
27170 5' -57.2 NC_005832.1 + 72841 0.74 0.354101
Target:  5'- aCAGGGUCugggGCCuGAGCGCCcucAGGGCCCa -3'
miRNA:   3'- cGUCCCGG----CGG-UUCGUGGa--UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 81293 0.73 0.378656
Target:  5'- gGCAGGG--GCCAcGGCACCgcAAGGCCCc -3'
miRNA:   3'- -CGUCCCggCGGU-UCGUGGa-UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 73081 0.73 0.378656
Target:  5'- -uGGGGuCCGUCGGG-ACCUAcgGGACCCu -3'
miRNA:   3'- cgUCCC-GGCGGUUCgUGGAU--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 50376 0.73 0.395649
Target:  5'- -aAGGGCCGCgGGG-ACCUGA-ACCCa -3'
miRNA:   3'- cgUCCCGGCGgUUCgUGGAUUcUGGG- -5'
27170 5' -57.2 NC_005832.1 + 7915 0.73 0.395649
Target:  5'- cCGGGaguGCCGCCGAccuGCACCgaaaaGAGACCUg -3'
miRNA:   3'- cGUCC---CGGCGGUU---CGUGGa----UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 75916 0.72 0.412241
Target:  5'- cCAGGGCCcugGCCAaggagaggggagaGGCACC--GGACCUa -3'
miRNA:   3'- cGUCCCGG---CGGU-------------UCGUGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 65768 0.72 0.413126
Target:  5'- --uGGGCaucaCCAAGUggaACCUGAGGCCCa -3'
miRNA:   3'- cguCCCGgc--GGUUCG---UGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 79890 0.72 0.422041
Target:  5'- -gAGGGCgGCCAug-GCCUcGGACCCu -3'
miRNA:   3'- cgUCCCGgCGGUucgUGGAuUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 75801 0.72 0.422041
Target:  5'- cGCcauGGGCUggGCCAGGUACCUGcaaaagcacaGGAUCCc -3'
miRNA:   3'- -CGu--CCCGG--CGGUUCGUGGAU----------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 24726 0.72 0.422041
Target:  5'- -aAGGGCCGCCc-GCugCUcagGAGAgCCa -3'
miRNA:   3'- cgUCCCGGCGGuuCGugGA---UUCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 54255 0.72 0.449465
Target:  5'- gGCAGGG-CGUCGggagggggAGCGCCggauguaAAGACCCu -3'
miRNA:   3'- -CGUCCCgGCGGU--------UCGUGGa------UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 46664 0.72 0.449465
Target:  5'- gGC-GGGCUccaggaauGCCAGGCGCCUGcAGGCgCa -3'
miRNA:   3'- -CGuCCCGG--------CGGUUCGUGGAU-UCUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.