miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 70906 0.69 0.608968
Target:  5'- cGCAGGcUCGCCAuucuCGCuCUGAGACCg -3'
miRNA:   3'- -CGUCCcGGCGGUuc--GUG-GAUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 52722 0.69 0.608968
Target:  5'- gGCGGcGGCCGCCGcaaAGguCUgauaGAGGCCa -3'
miRNA:   3'- -CGUC-CCGGCGGU---UCguGGa---UUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 79123 0.69 0.623538
Target:  5'- uCAGGGUCGCUuacgaggagguccguGAGgACgUAGGGCCUg -3'
miRNA:   3'- cGUCCCGGCGG---------------UUCgUGgAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 16796 0.69 0.629788
Target:  5'- -uGGGGCgGCCu-GCACCUGcuccacGACCa -3'
miRNA:   3'- cgUCCCGgCGGuuCGUGGAUu-----CUGGg -5'
27170 5' -57.2 NC_005832.1 + 102096 0.69 0.629788
Target:  5'- -uGGaGGCCGCCGAGgcaGCCauGGACgCCa -3'
miRNA:   3'- cgUC-CCGGCGGUUCg--UGGauUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 1014 0.68 0.640205
Target:  5'- -gGGGGCUGC--AGCGCCUucacACCCa -3'
miRNA:   3'- cgUCCCGGCGguUCGUGGAuuc-UGGG- -5'
27170 5' -57.2 NC_005832.1 + 83278 0.68 0.640205
Target:  5'- gGCGGGGCCaaaGAGCuCC--AGGCCCu -3'
miRNA:   3'- -CGUCCCGGcggUUCGuGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 27989 0.68 0.640205
Target:  5'- cCAGGGCCuGCCcGGCcGCCUccuuuGCCCu -3'
miRNA:   3'- cGUCCCGG-CGGuUCG-UGGAuuc--UGGG- -5'
27170 5' -57.2 NC_005832.1 + 86369 0.68 0.650615
Target:  5'- aGCAGGaGCCuGaaGAGCAgCCUGAGgagucuguugaGCCCg -3'
miRNA:   3'- -CGUCC-CGG-CggUUCGU-GGAUUC-----------UGGG- -5'
27170 5' -57.2 NC_005832.1 + 98709 0.68 0.650615
Target:  5'- aCAGGGCCGUgAA-CGCC---GGCCCg -3'
miRNA:   3'- cGUCCCGGCGgUUcGUGGauuCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 1520 0.68 0.659972
Target:  5'- uCGGGaGCCGCC-AGCcucacugccgaugGCCUGAG-CCUg -3'
miRNA:   3'- cGUCC-CGGCGGuUCG-------------UGGAUUCuGGG- -5'
27170 5' -57.2 NC_005832.1 + 1328 0.68 0.661011
Target:  5'- cGCGGaGGUCGCCAuGGCcuucucGCCUcugucaAAGACCg -3'
miRNA:   3'- -CGUC-CCGGCGGU-UCG------UGGA------UUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 62732 0.68 0.670346
Target:  5'- cGCAGGaGaCUGCCuuuauuaAGGCACUcGAGGCCa -3'
miRNA:   3'- -CGUCC-C-GGCGG-------UUCGUGGaUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 98353 0.68 0.671381
Target:  5'- uCGGGGCUGCCAugauCACCaGGGACa- -3'
miRNA:   3'- cGUCCCGGCGGUuc--GUGGaUUCUGgg -5'
27170 5' -57.2 NC_005832.1 + 15949 0.68 0.671381
Target:  5'- aCAGGGCCuCUugGAGCGCCUcu--CCCg -3'
miRNA:   3'- cGUCCCGGcGG--UUCGUGGAuucuGGG- -5'
27170 5' -57.2 NC_005832.1 + 36397 0.68 0.675521
Target:  5'- cGCAGaGGCCGCCGcgaggguccucuccaAGUacgGCCUcAAGGUCCg -3'
miRNA:   3'- -CGUC-CCGGCGGU---------------UCG---UGGA-UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 89851 0.68 0.68172
Target:  5'- uGCAacGcGCUGCCGGGCAUCaAGGACgCCg -3'
miRNA:   3'- -CGU--CcCGGCGGUUCGUGGaUUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 32633 0.68 0.68172
Target:  5'- -gAGGGa-GCCAuuGCGCCcgcgUAGGGCCCu -3'
miRNA:   3'- cgUCCCggCGGUu-CGUGG----AUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 56953 0.68 0.68172
Target:  5'- -aAGGccGUCGCCAcucagAGCGCCcAAGACCa -3'
miRNA:   3'- cgUCC--CGGCGGU-----UCGUGGaUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 40956 0.68 0.692015
Target:  5'- gGCAGGGUgGCuccCAGGUccgGCCU--GGCCCu -3'
miRNA:   3'- -CGUCCCGgCG---GUUCG---UGGAuuCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.