Results 61 - 80 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 36397 | 0.68 | 0.675521 |
Target: 5'- cGCAGaGGCCGCCGcgaggguccucuccaAGUacgGCCUcAAGGUCCg -3' miRNA: 3'- -CGUC-CCGGCGGU---------------UCG---UGGA-UUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 15949 | 0.68 | 0.671381 |
Target: 5'- aCAGGGCCuCUugGAGCGCCUcu--CCCg -3' miRNA: 3'- cGUCCCGGcGG--UUCGUGGAuucuGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 98353 | 0.68 | 0.671381 |
Target: 5'- uCGGGGCUGCCAugauCACCaGGGACa- -3' miRNA: 3'- cGUCCCGGCGGUuc--GUGGaUUCUGgg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 62732 | 0.68 | 0.670346 |
Target: 5'- cGCAGGaGaCUGCCuuuauuaAGGCACUcGAGGCCa -3' miRNA: 3'- -CGUCC-C-GGCGG-------UUCGUGGaUUCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 1328 | 0.68 | 0.661011 |
Target: 5'- cGCGGaGGUCGCCAuGGCcuucucGCCUcugucaAAGACCg -3' miRNA: 3'- -CGUC-CCGGCGGU-UCG------UGGA------UUCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 1520 | 0.68 | 0.659972 |
Target: 5'- uCGGGaGCCGCC-AGCcucacugccgaugGCCUGAG-CCUg -3' miRNA: 3'- cGUCC-CGGCGGuUCG-------------UGGAUUCuGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 86369 | 0.68 | 0.650615 |
Target: 5'- aGCAGGaGCCuGaaGAGCAgCCUGAGgagucuguugaGCCCg -3' miRNA: 3'- -CGUCC-CGG-CggUUCGU-GGAUUC-----------UGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 98709 | 0.68 | 0.650615 |
Target: 5'- aCAGGGCCGUgAA-CGCC---GGCCCg -3' miRNA: 3'- cGUCCCGGCGgUUcGUGGauuCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 27989 | 0.68 | 0.640205 |
Target: 5'- cCAGGGCCuGCCcGGCcGCCUccuuuGCCCu -3' miRNA: 3'- cGUCCCGG-CGGuUCG-UGGAuuc--UGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 1014 | 0.68 | 0.640205 |
Target: 5'- -gGGGGCUGC--AGCGCCUucacACCCa -3' miRNA: 3'- cgUCCCGGCGguUCGUGGAuuc-UGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 83278 | 0.68 | 0.640205 |
Target: 5'- gGCGGGGCCaaaGAGCuCC--AGGCCCu -3' miRNA: 3'- -CGUCCCGGcggUUCGuGGauUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 16796 | 0.69 | 0.629788 |
Target: 5'- -uGGGGCgGCCu-GCACCUGcuccacGACCa -3' miRNA: 3'- cgUCCCGgCGGuuCGUGGAUu-----CUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 102096 | 0.69 | 0.629788 |
Target: 5'- -uGGaGGCCGCCGAGgcaGCCauGGACgCCa -3' miRNA: 3'- cgUC-CCGGCGGUUCg--UGGauUCUG-GG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 79123 | 0.69 | 0.623538 |
Target: 5'- uCAGGGUCGCUuacgaggagguccguGAGgACgUAGGGCCUg -3' miRNA: 3'- cGUCCCGGCGG---------------UUCgUGgAUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 79718 | 0.69 | 0.608968 |
Target: 5'- aGCAGGGUacgaaaggguacuugGCCuuguugggGAGCAgguuggcCCUGAGGCCCg -3' miRNA: 3'- -CGUCCCGg--------------CGG--------UUCGU-------GGAUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 52722 | 0.69 | 0.608968 |
Target: 5'- gGCGGcGGCCGCCGcaaAGguCUgauaGAGGCCa -3' miRNA: 3'- -CGUC-CCGGCGGU---UCguGGa---UUCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 70906 | 0.69 | 0.608968 |
Target: 5'- cGCAGGcUCGCCAuucuCGCuCUGAGACCg -3' miRNA: 3'- -CGUCCcGGCGGUuc--GUG-GAUUCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 12991 | 0.69 | 0.598581 |
Target: 5'- uCGGGGuCCGUCAGGCugggguCC--AGGCCCc -3' miRNA: 3'- cGUCCC-GGCGGUUCGu-----GGauUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 67045 | 0.69 | 0.598581 |
Target: 5'- gGCgAGGGCCG-CGGGCguaaagagGCCUgaccuggacgccGAGGCCCu -3' miRNA: 3'- -CG-UCCCGGCgGUUCG--------UGGA------------UUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 97115 | 0.69 | 0.588219 |
Target: 5'- aGCA-GGCCGCCGcgguGGC-CCUGAGGgCa -3' miRNA: 3'- -CGUcCCGGCGGU----UCGuGGAUUCUgGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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