miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 915 0.71 0.487498
Target:  5'- aGCAgGGGCCgGCCGAGUAUgUGucGGACUUg -3'
miRNA:   3'- -CGU-CCCGG-CGGUUCGUGgAU--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 1014 0.68 0.640205
Target:  5'- -gGGGGCUGC--AGCGCCUucacACCCa -3'
miRNA:   3'- cgUCCCGGCGguUCGUGGAuuc-UGGG- -5'
27170 5' -57.2 NC_005832.1 + 1245 0.69 0.588219
Target:  5'- cGCGGGacGCCgGCUggGcCACC--AGGCCCg -3'
miRNA:   3'- -CGUCC--CGG-CGGuuC-GUGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 1328 0.68 0.661011
Target:  5'- cGCGGaGGUCGCCAuGGCcuucucGCCUcugucaAAGACCg -3'
miRNA:   3'- -CGUC-CCGGCGGU-UCG------UGGA------UUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 1520 0.68 0.659972
Target:  5'- uCGGGaGCCGCC-AGCcucacugccgaugGCCUGAG-CCUg -3'
miRNA:   3'- cGUCC-CGGCGGuUCG-------------UGGAUUCuGGG- -5'
27170 5' -57.2 NC_005832.1 + 5324 0.71 0.477843
Target:  5'- gGCGGGGUCGUCGuGCuCC-AGGGCCUu -3'
miRNA:   3'- -CGUCCCGGCGGUuCGuGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 5364 0.66 0.799737
Target:  5'- aCAGGGUCuugagccugaGCUggGcCACC--AGACCCu -3'
miRNA:   3'- cGUCCCGG----------CGGuuC-GUGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 7231 0.78 0.184119
Target:  5'- cGCuGGucaCCGCCGGGgACCUGAGACCUg -3'
miRNA:   3'- -CGuCCc--GGCGGUUCgUGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 7411 0.66 0.7621
Target:  5'- aCAGGaCCGCCGc-CGCgUAGGACCUu -3'
miRNA:   3'- cGUCCcGGCGGUucGUGgAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 7915 0.73 0.395649
Target:  5'- cCGGGaguGCCGCCGAccuGCACCgaaaaGAGACCUg -3'
miRNA:   3'- cGUCC---CGGCGGUU---CGUGGa----UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 8123 0.67 0.712442
Target:  5'- aGCAGGGCgGCCuucgagGAGUcCCUAgauauccugacgGGAgCCg -3'
miRNA:   3'- -CGUCCCGgCGG------UUCGuGGAU------------UCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 9340 0.66 0.781195
Target:  5'- cUAGGGuguccucguCCGCCGGGUuccACCUAcGGCCg -3'
miRNA:   3'- cGUCCC---------GGCGGUUCG---UGGAUuCUGGg -5'
27170 5' -57.2 NC_005832.1 + 10013 0.66 0.781195
Target:  5'- cGCGGaGGCCGUgGcuCACgUGAGGCUg -3'
miRNA:   3'- -CGUC-CCGGCGgUucGUGgAUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 10479 0.66 0.79054
Target:  5'- aCGGGGCCuaCAuaucccuGCugCUGGGGUCCa -3'
miRNA:   3'- cGUCCCGGcgGUu------CGugGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 10814 0.66 0.756274
Target:  5'- aGguGGGUCauGCCGgugccucccAGCACCUccccggcaaaggucAGACCCg -3'
miRNA:   3'- -CguCCCGG--CGGU---------UCGUGGAu-------------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 10955 0.66 0.771712
Target:  5'- cCGGGGaggUGCUgggAGGCACCggcauGACCCa -3'
miRNA:   3'- cGUCCCg--GCGG---UUCGUGGauu--CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 10991 0.66 0.758221
Target:  5'- uCAaGGCCGCCAGGC-CCgacgcgggucuGACCUu -3'
miRNA:   3'- cGUcCCGGCGGUUCGuGGauu--------CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 11687 0.7 0.566576
Target:  5'- aGgAGGGCCGuCCAGGacgacccCGCCUuuGGCCa -3'
miRNA:   3'- -CgUCCCGGC-GGUUC-------GUGGAuuCUGGg -5'
27170 5' -57.2 NC_005832.1 + 11938 0.66 0.771712
Target:  5'- aGCccGGCCagaGCCAgGGCACCUuc-ACCCu -3'
miRNA:   3'- -CGucCCGG---CGGU-UCGUGGAuucUGGG- -5'
27170 5' -57.2 NC_005832.1 + 12991 0.69 0.598581
Target:  5'- uCGGGGuCCGUCAGGCugggguCC--AGGCCCc -3'
miRNA:   3'- cGUCCC-GGCGGUUCGu-----GGauUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.