miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 15581 0.71 0.507077
Target:  5'- cGCAGGGUCGCCGgcguGguCCUAAuuGACgCu -3'
miRNA:   3'- -CGUCCCGGCGGUu---CguGGAUU--CUGgG- -5'
27170 5' -57.2 NC_005832.1 + 15949 0.68 0.671381
Target:  5'- aCAGGGCCuCUugGAGCGCCUcu--CCCg -3'
miRNA:   3'- cGUCCCGGcGG--UUCGUGGAuucuGGG- -5'
27170 5' -57.2 NC_005832.1 + 16796 0.69 0.629788
Target:  5'- -uGGGGCgGCCu-GCACCUGcuccacGACCa -3'
miRNA:   3'- cgUCCCGgCGGuuCGUGGAUu-----CUGGg -5'
27170 5' -57.2 NC_005832.1 + 19730 0.66 0.752368
Target:  5'- -gGGGGaCCGUCAGGC-CCaGGGGCUUu -3'
miRNA:   3'- cgUCCC-GGCGGUUCGuGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 20797 0.66 0.799737
Target:  5'- gGCAGGGCCcucaCCAgggcgguaaGGUACUcuGGGCCg -3'
miRNA:   3'- -CGUCCCGGc---GGU---------UCGUGGauUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 20832 0.66 0.79054
Target:  5'- cCAGGGCgGCCucGUACuCUGcucccGAUCCg -3'
miRNA:   3'- cGUCCCGgCGGuuCGUG-GAUu----CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 22921 0.69 0.588219
Target:  5'- aGCAGGGUCGU--GGUGCUUGAGAggaCCa -3'
miRNA:   3'- -CGUCCCGGCGguUCGUGGAUUCUg--GG- -5'
27170 5' -57.2 NC_005832.1 + 24726 0.72 0.422041
Target:  5'- -aAGGGCCGCCc-GCugCUcagGAGAgCCa -3'
miRNA:   3'- cgUCCCGGCGGuuCGugGA---UUCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 26596 0.75 0.301285
Target:  5'- gGCgAGGGCCGCCGGGUGgCU---GCCCg -3'
miRNA:   3'- -CG-UCCCGGCGGUUCGUgGAuucUGGG- -5'
27170 5' -57.2 NC_005832.1 + 27861 0.67 0.702259
Target:  5'- -aGGaGGCgGCCGGGCAggcCCU-GGACCUc -3'
miRNA:   3'- cgUC-CCGgCGGUUCGU---GGAuUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 27989 0.68 0.640205
Target:  5'- cCAGGGCCuGCCcGGCcGCCUccuuuGCCCu -3'
miRNA:   3'- cGUCCCGG-CGGuUCG-UGGAuuc--UGGG- -5'
27170 5' -57.2 NC_005832.1 + 28172 0.66 0.771712
Target:  5'- aCAGGGCCugaGCCAcGGUACCcccacuACCCu -3'
miRNA:   3'- cGUCCCGG---CGGU-UCGUGGauuc--UGGG- -5'
27170 5' -57.2 NC_005832.1 + 29421 0.66 0.781195
Target:  5'- aGCAGua-CGCacgaGAGCGCC-GGGACCCu -3'
miRNA:   3'- -CGUCccgGCGg---UUCGUGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 32371 1.14 0.000648
Target:  5'- gGCAGGGCCGCCAAGCACCUAAGACCCa -3'
miRNA:   3'- -CGUCCCGGCGGUUCGUGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 32633 0.68 0.68172
Target:  5'- -gAGGGa-GCCAuuGCGCCcgcgUAGGGCCCu -3'
miRNA:   3'- cgUCCCggCGGUu-CGUGG----AUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 33085 0.66 0.79054
Target:  5'- cCGGGGUgGCCGuccAGUuCCUGauGGGCCUc -3'
miRNA:   3'- cGUCCCGgCGGU---UCGuGGAU--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 33594 0.66 0.799737
Target:  5'- -gAGGGUCGCCGcgGGCAagauAGGCuCCa -3'
miRNA:   3'- cgUCCCGGCGGU--UCGUggauUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 36141 0.66 0.752368
Target:  5'- aGCucGGCCGUCAGGCcCuCUAGGcacuacaacGCCCc -3'
miRNA:   3'- -CGucCCGGCGGUUCGuG-GAUUC---------UGGG- -5'
27170 5' -57.2 NC_005832.1 + 36397 0.68 0.675521
Target:  5'- cGCAGaGGCCGCCGcgaggguccucuccaAGUacgGCCUcAAGGUCCg -3'
miRNA:   3'- -CGUC-CCGGCGGU---------------UCG---UGGA-UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 36674 0.75 0.308444
Target:  5'- aGCAGGuaCGCCAAcGC-CCUGuGGCCCc -3'
miRNA:   3'- -CGUCCcgGCGGUU-CGuGGAUuCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.