miRNA display CGI


Results 61 - 80 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 54807 0.66 0.7621
Target:  5'- -aAGGGCCGaCGggGGgACCguccuGGACCCc -3'
miRNA:   3'- cgUCCCGGCgGU--UCgUGGau---UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 55653 0.66 0.781195
Target:  5'- cGCAuGGaCCGCCGuGUcguCCUuauAGGCCCa -3'
miRNA:   3'- -CGUcCC-GGCGGUuCGu--GGAu--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 56131 0.7 0.567602
Target:  5'- cCAGGGCCGCguacggcuacgCGGGCcCCgugucuGGCCCa -3'
miRNA:   3'- cGUCCCGGCG-----------GUUCGuGGauu---CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 56278 0.66 0.752368
Target:  5'- cCAcGGCCGUCAAGCuCCagGAGACgCu -3'
miRNA:   3'- cGUcCCGGCGGUUCGuGGa-UUCUGgG- -5'
27170 5' -57.2 NC_005832.1 + 56520 0.66 0.79054
Target:  5'- ---uGGCCGgCAGGaggGCCaUAGGACCCc -3'
miRNA:   3'- cgucCCGGCgGUUCg--UGG-AUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 56614 0.66 0.7621
Target:  5'- -aGGGGagaUGCCAAG-GCCUcGGGCCUg -3'
miRNA:   3'- cgUCCCg--GCGGUUCgUGGAuUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 56953 0.68 0.68172
Target:  5'- -aAGGccGUCGCCAcucagAGCGCCcAAGACCa -3'
miRNA:   3'- cgUCC--CGGCGGU-----UCGUGGaUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 62423 0.66 0.752368
Target:  5'- cGCAaGGCUcCCGAGgACCaGAGGCCg -3'
miRNA:   3'- -CGUcCCGGcGGUUCgUGGaUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 62732 0.68 0.670346
Target:  5'- cGCAGGaGaCUGCCuuuauuaAGGCACUcGAGGCCa -3'
miRNA:   3'- -CGUCC-C-GGCGG-------UUCGUGGaUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 64130 0.71 0.497244
Target:  5'- uCAGGGa-GCCGGGUAUC-AGGGCCCu -3'
miRNA:   3'- cGUCCCggCGGUUCGUGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 65450 0.74 0.34617
Target:  5'- uGCAGGGCCuCCAGcuGCGCCcu-GACCa -3'
miRNA:   3'- -CGUCCCGGcGGUU--CGUGGauuCUGGg -5'
27170 5' -57.2 NC_005832.1 + 65768 0.72 0.413126
Target:  5'- --uGGGCaucaCCAAGUggaACCUGAGGCCCa -3'
miRNA:   3'- cguCCCGgc--GGUUCG---UGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 67045 0.69 0.598581
Target:  5'- gGCgAGGGCCG-CGGGCguaaagagGCCUgaccuggacgccGAGGCCCu -3'
miRNA:   3'- -CG-UCCCGGCgGUUCG--------UGGA------------UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 67547 0.66 0.7621
Target:  5'- --uGGGCCcuGCCGuuuGGgACC-AGGACCCc -3'
miRNA:   3'- cguCCCGG--CGGU---UCgUGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 70350 0.66 0.771712
Target:  5'- aCAGGGCCGUa---CACCU-AGACUa -3'
miRNA:   3'- cGUCCCGGCGguucGUGGAuUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 70906 0.69 0.608968
Target:  5'- cGCAGGcUCGCCAuucuCGCuCUGAGACCg -3'
miRNA:   3'- -CGUCCcGGCGGUuc--GUG-GAUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 71166 0.66 0.771712
Target:  5'- cGgAGaGGCCGUCAGGCcguCC-GAG-CCCg -3'
miRNA:   3'- -CgUC-CCGGCGGUUCGu--GGaUUCuGGG- -5'
27170 5' -57.2 NC_005832.1 + 72297 0.66 0.771712
Target:  5'- cCAGGGgCGaCCAGGgGCCgcaagGAGACa- -3'
miRNA:   3'- cGUCCCgGC-GGUUCgUGGa----UUCUGgg -5'
27170 5' -57.2 NC_005832.1 + 72725 0.71 0.477843
Target:  5'- cGCGgacGGGCCGUUggGCAagacgggucCCaGGGGCCCa -3'
miRNA:   3'- -CGU---CCCGGCGGuuCGU---------GGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 72779 0.78 0.193737
Target:  5'- --uGGGCCGUCGGGCcCCgcGGGCCCa -3'
miRNA:   3'- cguCCCGGCGGUUCGuGGauUCUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.