miRNA display CGI


Results 81 - 100 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 72841 0.74 0.354101
Target:  5'- aCAGGGUCugggGCCuGAGCGCCcucAGGGCCCa -3'
miRNA:   3'- cGUCCCGG----CGG-UUCGUGGa--UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 72881 0.81 0.124591
Target:  5'- uGUAGGGCCcuCUggGCcCCUGGGACCCg -3'
miRNA:   3'- -CGUCCCGGc-GGuuCGuGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 73081 0.73 0.378656
Target:  5'- -uGGGGuCCGUCGGG-ACCUAcgGGACCCu -3'
miRNA:   3'- cgUCCC-GGCGGUUCgUGGAU--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 74573 0.66 0.760162
Target:  5'- cCAGGcCCGUCAGGUACUUuagccucuuuacGGACCCc -3'
miRNA:   3'- cGUCCcGGCGGUUCGUGGAu-----------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 75801 0.72 0.422041
Target:  5'- cGCcauGGGCUggGCCAGGUACCUGcaaaagcacaGGAUCCc -3'
miRNA:   3'- -CGu--CCCGG--CGGUUCGUGGAU----------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 75916 0.72 0.412241
Target:  5'- cCAGGGCCcugGCCAaggagaggggagaGGCACC--GGACCUa -3'
miRNA:   3'- cGUCCCGG---CGGU-------------UCGUGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 78353 0.66 0.752368
Target:  5'- cGCGGcGGCCGUgCAGGacaGCCUcguucacgucGACCCa -3'
miRNA:   3'- -CGUC-CCGGCG-GUUCg--UGGAuu--------CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 78732 0.66 0.771712
Target:  5'- -aGGGGCacgaGCCGgugGGCGCCgcAGAgUCCa -3'
miRNA:   3'- cgUCCCGg---CGGU---UCGUGGauUCU-GGG- -5'
27170 5' -57.2 NC_005832.1 + 79123 0.69 0.623538
Target:  5'- uCAGGGUCGCUuacgaggagguccguGAGgACgUAGGGCCUg -3'
miRNA:   3'- cGUCCCGGCGG---------------UUCgUGgAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 79718 0.69 0.608968
Target:  5'- aGCAGGGUacgaaaggguacuugGCCuuguugggGAGCAgguuggcCCUGAGGCCCg -3'
miRNA:   3'- -CGUCCCGg--------------CGG--------UUCGU-------GGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 79890 0.72 0.422041
Target:  5'- -gAGGGCgGCCAug-GCCUcGGACCCu -3'
miRNA:   3'- cgUCCCGgCGGUucgUGGAuUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 80558 0.66 0.79054
Target:  5'- -gGGGGCauggGCCAAGuCACCaggguaaAGGAUCCc -3'
miRNA:   3'- cgUCCCGg---CGGUUC-GUGGa------UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 80915 0.69 0.577891
Target:  5'- aGCAgacuGGGCCGUCAAGguCCccgacguaAAGACCg -3'
miRNA:   3'- -CGU----CCCGGCGGUUCguGGa-------UUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 81135 0.67 0.702259
Target:  5'- aGgAGGGCCGUCGuagacugggaacGGgGCCUugcGGugCCg -3'
miRNA:   3'- -CgUCCCGGCGGU------------UCgUGGAu--UCugGG- -5'
27170 5' -57.2 NC_005832.1 + 81293 0.73 0.378656
Target:  5'- gGCAGGG--GCCAcGGCACCgcAAGGCCCc -3'
miRNA:   3'- -CGUCCCggCGGU-UCGUGGa-UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 83278 0.68 0.640205
Target:  5'- gGCGGGGCCaaaGAGCuCC--AGGCCCu -3'
miRNA:   3'- -CGUCCCGGcggUUCGuGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 83431 0.66 0.7621
Target:  5'- -gAGGGCCGgCGGGgACauagaagAGGGCCUg -3'
miRNA:   3'- cgUCCCGGCgGUUCgUGga-----UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 86369 0.68 0.650615
Target:  5'- aGCAGGaGCCuGaaGAGCAgCCUGAGgagucuguugaGCCCg -3'
miRNA:   3'- -CGUCC-CGG-CggUUCGU-GGAUUC-----------UGGG- -5'
27170 5' -57.2 NC_005832.1 + 87228 0.67 0.722554
Target:  5'- aCAGGGCCaCCcucacccugGAGaGCCUGAGGgCCa -3'
miRNA:   3'- cGUCCCGGcGG---------UUCgUGGAUUCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 89296 0.66 0.752368
Target:  5'- cCAGuauaGCCuCCAGGCACUUGAcGACCUg -3'
miRNA:   3'- cGUCc---CGGcGGUUCGUGGAUU-CUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.