miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 103983 0.66 0.780253
Target:  5'- -gAGGGCCGCCGcggacgccgugggGGUagacaacaugGCCUGu-GCCCa -3'
miRNA:   3'- cgUCCCGGCGGU-------------UCG----------UGGAUucUGGG- -5'
27170 5' -57.2 NC_005832.1 + 102096 0.69 0.629788
Target:  5'- -uGGaGGCCGCCGAGgcaGCCauGGACgCCa -3'
miRNA:   3'- cgUC-CCGGCGGUUCg--UGGauUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 101879 0.66 0.752368
Target:  5'- -gAGGGCCGggAAGgGCUU-GGACCCc -3'
miRNA:   3'- cgUCCCGGCggUUCgUGGAuUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 100301 0.67 0.712442
Target:  5'- cCGGGGuCCGgCAAGUccacCCUGaucaAGGCCCu -3'
miRNA:   3'- cGUCCC-GGCgGUUCGu---GGAU----UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 98709 0.68 0.650615
Target:  5'- aCAGGGCCGUgAA-CGCC---GGCCCg -3'
miRNA:   3'- cGUCCCGGCGgUUcGUGGauuCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 98353 0.68 0.671381
Target:  5'- uCGGGGCUGCCAugauCACCaGGGACa- -3'
miRNA:   3'- cGUCCCGGCGGUuc--GUGGaUUCUGgg -5'
27170 5' -57.2 NC_005832.1 + 98305 0.66 0.7621
Target:  5'- cGguGGGCCugaGCCu-GU-CCUGGGGCCa -3'
miRNA:   3'- -CguCCCGG---CGGuuCGuGGAUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 97115 0.69 0.588219
Target:  5'- aGCA-GGCCGCCGcgguGGC-CCUGAGGgCa -3'
miRNA:   3'- -CGUcCCGGCGGU----UCGuGGAUUCUgGg -5'
27170 5' -57.2 NC_005832.1 + 94186 0.78 0.198708
Target:  5'- uCAGGGCCGCCAcggcguGCGCCUAuaucuuuCCCg -3'
miRNA:   3'- cGUCCCGGCGGUu-----CGUGGAUucu----GGG- -5'
27170 5' -57.2 NC_005832.1 + 94064 0.7 0.526982
Target:  5'- cGCcGuGGCgGCCcugauGUACUUGAGGCCCg -3'
miRNA:   3'- -CGuC-CCGgCGGuu---CGUGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 91469 0.66 0.752368
Target:  5'- gGCAGGGUCaCCAGGC-UCgcAGACUa -3'
miRNA:   3'- -CGUCCCGGcGGUUCGuGGauUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 91371 0.67 0.732586
Target:  5'- gGCGGcGGUaaaGUCGuAGCGCCUAaagaacacGGACCUg -3'
miRNA:   3'- -CGUC-CCGg--CGGU-UCGUGGAU--------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 91318 0.66 0.771712
Target:  5'- aGCuuGGCCaugacgGCCGAGUagucugcgaGCCUGGuGACCCu -3'
miRNA:   3'- -CGucCCGG------CGGUUCG---------UGGAUU-CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 90111 0.66 0.789612
Target:  5'- uGCuGGGCUGCUuugcgguaaagauGAGCACCc-AGACaCUg -3'
miRNA:   3'- -CGuCCCGGCGG-------------UUCGUGGauUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 89851 0.68 0.68172
Target:  5'- uGCAacGcGCUGCCGGGCAUCaAGGACgCCg -3'
miRNA:   3'- -CGU--CcCGGCGGUUCGUGGaUUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 89433 0.7 0.526982
Target:  5'- gGCA-GGUCGUCAAGUGCCUgGAGGCUa -3'
miRNA:   3'- -CGUcCCGGCGGUUCGUGGA-UUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 89296 0.66 0.752368
Target:  5'- cCAGuauaGCCuCCAGGCACUUGAcGACCUg -3'
miRNA:   3'- cGUCc---CGGcGGUUCGUGGAUU-CUGGG- -5'
27170 5' -57.2 NC_005832.1 + 87228 0.67 0.722554
Target:  5'- aCAGGGCCaCCcucacccugGAGaGCCUGAGGgCCa -3'
miRNA:   3'- cGUCCCGGcGG---------UUCgUGGAUUCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 86369 0.68 0.650615
Target:  5'- aGCAGGaGCCuGaaGAGCAgCCUGAGgagucuguugaGCCCg -3'
miRNA:   3'- -CGUCC-CGG-CggUUCGU-GGAUUC-----------UGGG- -5'
27170 5' -57.2 NC_005832.1 + 83431 0.66 0.7621
Target:  5'- -gAGGGCCGgCGGGgACauagaagAGGGCCUg -3'
miRNA:   3'- cgUCCCGGCgGUUCgUGga-----UUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.