miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 51744 0.66 0.79054
Target:  5'- ---aGGCCGCCuGAGCcauACCcAGGGCCUc -3'
miRNA:   3'- cgucCCGGCGG-UUCG---UGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 50918 0.72 0.458822
Target:  5'- gGCcGGuCCaGUCAGGCGCgUGGGACCCa -3'
miRNA:   3'- -CGuCCcGG-CGGUUCGUGgAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 50779 0.66 0.752368
Target:  5'- cGCcccuGGGUC-CCAcGCGCCUGacuGGACCg -3'
miRNA:   3'- -CGu---CCCGGcGGUuCGUGGAU---UCUGGg -5'
27170 5' -57.2 NC_005832.1 + 50376 0.73 0.395649
Target:  5'- -aAGGGCCGCgGGG-ACCUGA-ACCCa -3'
miRNA:   3'- cgUCCCGGCGgUUCgUGGAUUcUGGG- -5'
27170 5' -57.2 NC_005832.1 + 49370 0.66 0.771712
Target:  5'- gGCGuGcGCCGCCAuGUcccGCCUGaccuccucGGACCCu -3'
miRNA:   3'- -CGUcC-CGGCGGUuCG---UGGAU--------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 48252 0.72 0.457882
Target:  5'- uGCAGGGCCcaGCCAguccuccAGCucaccaGCCUcaGGGACCUu -3'
miRNA:   3'- -CGUCCCGG--CGGU-------UCG------UGGA--UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 46664 0.72 0.449465
Target:  5'- gGC-GGGCUccaggaauGCCAGGCGCCUGcAGGCgCa -3'
miRNA:   3'- -CGuCCCGG--------CGGUUCGUGGAU-UCUGgG- -5'
27170 5' -57.2 NC_005832.1 + 43174 0.66 0.771712
Target:  5'- -aAGGGCCuGCCGGGCuuCUuuGAGGgcgcuCCCg -3'
miRNA:   3'- cgUCCCGG-CGGUUCGugGA--UUCU-----GGG- -5'
27170 5' -57.2 NC_005832.1 + 42611 0.66 0.781195
Target:  5'- ---cGGCCuGCUucGCGCCUucGGCCUg -3'
miRNA:   3'- cgucCCGG-CGGuuCGUGGAuuCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 42605 0.66 0.79054
Target:  5'- gGCGGagacGCUGCgGAGCACCUGGGGu-- -3'
miRNA:   3'- -CGUCc---CGGCGgUUCGUGGAUUCUggg -5'
27170 5' -57.2 NC_005832.1 + 42501 0.71 0.497244
Target:  5'- aGgAGGGCCGCCAuGC-UCUGgugguGGACCg -3'
miRNA:   3'- -CgUCCCGGCGGUuCGuGGAU-----UCUGGg -5'
27170 5' -57.2 NC_005832.1 + 40956 0.68 0.692015
Target:  5'- gGCAGGGUgGCuccCAGGUccgGCCU--GGCCCu -3'
miRNA:   3'- -CGUCCCGgCG---GUUCG---UGGAuuCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 40818 0.71 0.497244
Target:  5'- cCAGGGCCagGCCGG--ACCUGGGAgCCa -3'
miRNA:   3'- cGUCCCGG--CGGUUcgUGGAUUCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 39936 0.67 0.742527
Target:  5'- cCAGGcGCCccGCUAGG-ACCgguuGGACCCa -3'
miRNA:   3'- cGUCC-CGG--CGGUUCgUGGau--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 39215 0.66 0.799737
Target:  5'- -uGGGGUC-CCGgacGGCccuCCUGGGAUCCg -3'
miRNA:   3'- cgUCCCGGcGGU---UCGu--GGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 36925 0.66 0.781195
Target:  5'- gGUAGGaGCCGCgAA-CGagUAGGGCCCg -3'
miRNA:   3'- -CGUCC-CGGCGgUUcGUggAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 36674 0.75 0.308444
Target:  5'- aGCAGGuaCGCCAAcGC-CCUGuGGCCCc -3'
miRNA:   3'- -CGUCCcgGCGGUU-CGuGGAUuCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 36397 0.68 0.675521
Target:  5'- cGCAGaGGCCGCCGcgaggguccucuccaAGUacgGCCUcAAGGUCCg -3'
miRNA:   3'- -CGUC-CCGGCGGU---------------UCG---UGGA-UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 36141 0.66 0.752368
Target:  5'- aGCucGGCCGUCAGGCcCuCUAGGcacuacaacGCCCc -3'
miRNA:   3'- -CGucCCGGCGGUUCGuG-GAUUC---------UGGG- -5'
27170 5' -57.2 NC_005832.1 + 33594 0.66 0.799737
Target:  5'- -gAGGGUCGCCGcgGGCAagauAGGCuCCa -3'
miRNA:   3'- cgUCCCGGCGGU--UCGUggauUCUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.