miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 1520 0.68 0.659972
Target:  5'- uCGGGaGCCGCC-AGCcucacugccgaugGCCUGAG-CCUg -3'
miRNA:   3'- cGUCC-CGGCGGuUCG-------------UGGAUUCuGGG- -5'
27170 5' -57.2 NC_005832.1 + 80915 0.69 0.577891
Target:  5'- aGCAgacuGGGCCGUCAAGguCCccgacguaAAGACCg -3'
miRNA:   3'- -CGU----CCCGGCGGUUCguGGa-------UUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 97115 0.69 0.588219
Target:  5'- aGCA-GGCCGCCGcgguGGC-CCUGAGGgCa -3'
miRNA:   3'- -CGUcCCGGCGGU----UCGuGGAUUCUgGg -5'
27170 5' -57.2 NC_005832.1 + 12991 0.69 0.598581
Target:  5'- uCGGGGuCCGUCAGGCugggguCC--AGGCCCc -3'
miRNA:   3'- cGUCCC-GGCGGUUCGu-----GGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 67045 0.69 0.598581
Target:  5'- gGCgAGGGCCG-CGGGCguaaagagGCCUgaccuggacgccGAGGCCCu -3'
miRNA:   3'- -CG-UCCCGGCgGUUCG--------UGGA------------UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 52722 0.69 0.608968
Target:  5'- gGCGGcGGCCGCCGcaaAGguCUgauaGAGGCCa -3'
miRNA:   3'- -CGUC-CCGGCGGU---UCguGGa---UUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 16796 0.69 0.629788
Target:  5'- -uGGGGCgGCCu-GCACCUGcuccacGACCa -3'
miRNA:   3'- cgUCCCGgCGGuuCGUGGAUu-----CUGGg -5'
27170 5' -57.2 NC_005832.1 + 102096 0.69 0.629788
Target:  5'- -uGGaGGCCGCCGAGgcaGCCauGGACgCCa -3'
miRNA:   3'- cgUC-CCGGCGGUUCg--UGGauUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 83278 0.68 0.640205
Target:  5'- gGCGGGGCCaaaGAGCuCC--AGGCCCu -3'
miRNA:   3'- -CGUCCCGGcggUUCGuGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 94064 0.7 0.526982
Target:  5'- cGCcGuGGCgGCCcugauGUACUUGAGGCCCg -3'
miRNA:   3'- -CGuC-CCGgCGGuu---CGUGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 40818 0.71 0.497244
Target:  5'- cCAGGGCCagGCCGG--ACCUGGGAgCCa -3'
miRNA:   3'- cGUCCCGG--CGGUUcgUGGAUUCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 915 0.71 0.487498
Target:  5'- aGCAgGGGCCgGCCGAGUAUgUGucGGACUUg -3'
miRNA:   3'- -CGU-CCCGG-CGGUUCGUGgAU--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 72841 0.74 0.354101
Target:  5'- aCAGGGUCugggGCCuGAGCGCCcucAGGGCCCa -3'
miRNA:   3'- cGUCCCGG----CGG-UUCGUGGa--UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 50376 0.73 0.395649
Target:  5'- -aAGGGCCGCgGGG-ACCUGA-ACCCa -3'
miRNA:   3'- cgUCCCGGCGgUUCgUGGAUUcUGGG- -5'
27170 5' -57.2 NC_005832.1 + 75916 0.72 0.412241
Target:  5'- cCAGGGCCcugGCCAaggagaggggagaGGCACC--GGACCUa -3'
miRNA:   3'- cGUCCCGG---CGGU-------------UCGUGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 65768 0.72 0.413126
Target:  5'- --uGGGCaucaCCAAGUggaACCUGAGGCCCa -3'
miRNA:   3'- cguCCCGgc--GGUUCG---UGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 75801 0.72 0.422041
Target:  5'- cGCcauGGGCUggGCCAGGUACCUGcaaaagcacaGGAUCCc -3'
miRNA:   3'- -CGu--CCCGG--CGGUUCGUGGAU----------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 79890 0.72 0.422041
Target:  5'- -gAGGGCgGCCAug-GCCUcGGACCCu -3'
miRNA:   3'- cgUCCCGgCGGUucgUGGAuUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 46664 0.72 0.449465
Target:  5'- gGC-GGGCUccaggaauGCCAGGCGCCUGcAGGCgCa -3'
miRNA:   3'- -CGuCCCGG--------CGGUUCGUGGAU-UCUGgG- -5'
27170 5' -57.2 NC_005832.1 + 72725 0.71 0.477843
Target:  5'- cGCGgacGGGCCGUUggGCAagacgggucCCaGGGGCCCa -3'
miRNA:   3'- -CGU---CCCGGCGGuuCGU---------GGaUUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.