miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 16796 0.69 0.629788
Target:  5'- -uGGGGCgGCCu-GCACCUGcuccacGACCa -3'
miRNA:   3'- cgUCCCGgCGGuuCGUGGAUu-----CUGGg -5'
27170 5' -57.2 NC_005832.1 + 52722 0.69 0.608968
Target:  5'- gGCGGcGGCCGCCGcaaAGguCUgauaGAGGCCa -3'
miRNA:   3'- -CGUC-CCGGCGGU---UCguGGa---UUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 67045 0.69 0.598581
Target:  5'- gGCgAGGGCCG-CGGGCguaaagagGCCUgaccuggacgccGAGGCCCu -3'
miRNA:   3'- -CG-UCCCGGCgGUUCG--------UGGA------------UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 12991 0.69 0.598581
Target:  5'- uCGGGGuCCGUCAGGCugggguCC--AGGCCCc -3'
miRNA:   3'- cGUCCC-GGCGGUUCGu-----GGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 97115 0.69 0.588219
Target:  5'- aGCA-GGCCGCCGcgguGGC-CCUGAGGgCa -3'
miRNA:   3'- -CGUcCCGGCGGU----UCGuGGAUUCUgGg -5'
27170 5' -57.2 NC_005832.1 + 80915 0.69 0.577891
Target:  5'- aGCAgacuGGGCCGUCAAGguCCccgacguaAAGACCg -3'
miRNA:   3'- -CGU----CCCGGCGGUUCguGGa-------UUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 73081 0.73 0.378656
Target:  5'- -uGGGGuCCGUCGGG-ACCUAcgGGACCCu -3'
miRNA:   3'- cgUCCC-GGCGGUUCgUGGAU--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 7915 0.73 0.395649
Target:  5'- cCGGGaguGCCGCCGAccuGCACCgaaaaGAGACCUg -3'
miRNA:   3'- cGUCC---CGGCGGUU---CGUGGa----UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 24726 0.72 0.422041
Target:  5'- -aAGGGCCGCCc-GCugCUcagGAGAgCCa -3'
miRNA:   3'- cgUCCCGGCGGuuCGugGA---UUCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 54255 0.72 0.449465
Target:  5'- gGCAGGG-CGUCGggagggggAGCGCCggauguaAAGACCCu -3'
miRNA:   3'- -CGUCCCgGCGGU--------UCGUGGa------UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 48252 0.72 0.457882
Target:  5'- uGCAGGGCCcaGCCAguccuccAGCucaccaGCCUcaGGGACCUu -3'
miRNA:   3'- -CGUCCCGG--CGGU-------UCG------UGGA--UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 50918 0.72 0.458822
Target:  5'- gGCcGGuCCaGUCAGGCGCgUGGGACCCa -3'
miRNA:   3'- -CGuCCcGG-CGGUUCGUGgAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 81293 0.73 0.378656
Target:  5'- gGCAGGG--GCCAcGGCACCgcAAGGCCCc -3'
miRNA:   3'- -CGUCCCggCGGU-UCGUGGa-UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 65450 0.74 0.34617
Target:  5'- uGCAGGGCCuCCAGcuGCGCCcu-GACCa -3'
miRNA:   3'- -CGUCCCGGcGGUU--CGUGGauuCUGGg -5'
27170 5' -57.2 NC_005832.1 + 36674 0.75 0.308444
Target:  5'- aGCAGGuaCGCCAAcGC-CCUGuGGCCCc -3'
miRNA:   3'- -CGUCCcgGCGGUU-CGuGGAUuCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 26596 0.75 0.301285
Target:  5'- gGCgAGGGCCGCCGGGUGgCU---GCCCg -3'
miRNA:   3'- -CG-UCCCGGCGGUUCGUgGAuucUGGG- -5'
27170 5' -57.2 NC_005832.1 + 94186 0.78 0.198708
Target:  5'- uCAGGGCCGCCAcggcguGCGCCUAuaucuuuCCCg -3'
miRNA:   3'- cGUCCCGGCGGUu-----CGUGGAUucu----GGG- -5'
27170 5' -57.2 NC_005832.1 + 72779 0.78 0.193737
Target:  5'- --uGGGCCGUCGGGCcCCgcGGGCCCa -3'
miRNA:   3'- cguCCCGGCGGUUCGuGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 7231 0.78 0.184119
Target:  5'- cGCuGGucaCCGCCGGGgACCUGAGACCUg -3'
miRNA:   3'- -CGuCCc--GGCGGUUCgUGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 33594 0.66 0.799737
Target:  5'- -gAGGGUCGCCGcgGGCAagauAGGCuCCa -3'
miRNA:   3'- cgUCCCGGCGGU--UCGUggauUCUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.