miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 36397 0.68 0.675521
Target:  5'- cGCAGaGGCCGCCGcgaggguccucuccaAGUacgGCCUcAAGGUCCg -3'
miRNA:   3'- -CGUC-CCGGCGGU---------------UCG---UGGA-UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 89851 0.68 0.68172
Target:  5'- uGCAacGcGCUGCCGGGCAUCaAGGACgCCg -3'
miRNA:   3'- -CGU--CcCGGCGGUUCGUGGaUUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 89433 0.7 0.526982
Target:  5'- gGCA-GGUCGUCAAGUGCCUgGAGGCUa -3'
miRNA:   3'- -CGUcCCGGCGGUUCGUGGA-UUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 15581 0.71 0.507077
Target:  5'- cGCAGGGUCGCCGgcguGguCCUAAuuGACgCu -3'
miRNA:   3'- -CGUCCCGGCGGUu---CguGGAUU--CUGgG- -5'
27170 5' -57.2 NC_005832.1 + 42501 0.71 0.497244
Target:  5'- aGgAGGGCCGCCAuGC-UCUGgugguGGACCg -3'
miRNA:   3'- -CgUCCCGGCGGUuCGuGGAU-----UCUGGg -5'
27170 5' -57.2 NC_005832.1 + 7231 0.78 0.184119
Target:  5'- cGCuGGucaCCGCCGGGgACCUGAGACCUg -3'
miRNA:   3'- -CGuCCc--GGCGGUUCgUGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 72779 0.78 0.193737
Target:  5'- --uGGGCCGUCGGGCcCCgcGGGCCCa -3'
miRNA:   3'- cguCCCGGCGGUUCGuGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 94186 0.78 0.198708
Target:  5'- uCAGGGCCGCCAcggcguGCGCCUAuaucuuuCCCg -3'
miRNA:   3'- cGUCCCGGCGGUu-----CGUGGAUucu----GGG- -5'
27170 5' -57.2 NC_005832.1 + 26596 0.75 0.301285
Target:  5'- gGCgAGGGCCGCCGGGUGgCU---GCCCg -3'
miRNA:   3'- -CG-UCCCGGCGGUUCGUgGAuucUGGG- -5'
27170 5' -57.2 NC_005832.1 + 36674 0.75 0.308444
Target:  5'- aGCAGGuaCGCCAAcGC-CCUGuGGCCCc -3'
miRNA:   3'- -CGUCCcgGCGGUU-CGuGGAUuCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 65450 0.74 0.34617
Target:  5'- uGCAGGGCCuCCAGcuGCGCCcu-GACCa -3'
miRNA:   3'- -CGUCCCGGcGGUU--CGUGGauuCUGGg -5'
27170 5' -57.2 NC_005832.1 + 81293 0.73 0.378656
Target:  5'- gGCAGGG--GCCAcGGCACCgcAAGGCCCc -3'
miRNA:   3'- -CGUCCCggCGGU-UCGUGGa-UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 73081 0.73 0.378656
Target:  5'- -uGGGGuCCGUCGGG-ACCUAcgGGACCCu -3'
miRNA:   3'- cgUCCC-GGCGGUUCgUGGAU--UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 7915 0.73 0.395649
Target:  5'- cCGGGaguGCCGCCGAccuGCACCgaaaaGAGACCUg -3'
miRNA:   3'- cGUCC---CGGCGGUU---CGUGGa----UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 24726 0.72 0.422041
Target:  5'- -aAGGGCCGCCc-GCugCUcagGAGAgCCa -3'
miRNA:   3'- cgUCCCGGCGGuuCGugGA---UUCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 54255 0.72 0.449465
Target:  5'- gGCAGGG-CGUCGggagggggAGCGCCggauguaAAGACCCu -3'
miRNA:   3'- -CGUCCCgGCGGU--------UCGUGGa------UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 48252 0.72 0.457882
Target:  5'- uGCAGGGCCcaGCCAguccuccAGCucaccaGCCUcaGGGACCUu -3'
miRNA:   3'- -CGUCCCGG--CGGU-------UCG------UGGA--UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 50918 0.72 0.458822
Target:  5'- gGCcGGuCCaGUCAGGCGCgUGGGACCCa -3'
miRNA:   3'- -CGuCCcGG-CGGUUCGUGgAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 5324 0.71 0.477843
Target:  5'- gGCGGGGUCGUCGuGCuCC-AGGGCCUu -3'
miRNA:   3'- -CGUCCCGGCGGUuCGuGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 64130 0.71 0.497244
Target:  5'- uCAGGGa-GCCGGGUAUC-AGGGCCCu -3'
miRNA:   3'- cGUCCCggCGGUUCGUGGaUUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.