Results 81 - 100 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 65450 | 0.74 | 0.34617 |
Target: 5'- uGCAGGGCCuCCAGcuGCGCCcu-GACCa -3' miRNA: 3'- -CGUCCCGGcGGUU--CGUGGauuCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 36674 | 0.75 | 0.308444 |
Target: 5'- aGCAGGuaCGCCAAcGC-CCUGuGGCCCc -3' miRNA: 3'- -CGUCCcgGCGGUU-CGuGGAUuCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 26596 | 0.75 | 0.301285 |
Target: 5'- gGCgAGGGCCGCCGGGUGgCU---GCCCg -3' miRNA: 3'- -CG-UCCCGGCGGUUCGUgGAuucUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 94186 | 0.78 | 0.198708 |
Target: 5'- uCAGGGCCGCCAcggcguGCGCCUAuaucuuuCCCg -3' miRNA: 3'- cGUCCCGGCGGUu-----CGUGGAUucu----GGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 72779 | 0.78 | 0.193737 |
Target: 5'- --uGGGCCGUCGGGCcCCgcGGGCCCa -3' miRNA: 3'- cguCCCGGCGGUUCGuGGauUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 7231 | 0.78 | 0.184119 |
Target: 5'- cGCuGGucaCCGCCGGGgACCUGAGACCUg -3' miRNA: 3'- -CGuCCc--GGCGGUUCgUGGAUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 48252 | 0.72 | 0.457882 |
Target: 5'- uGCAGGGCCcaGCCAguccuccAGCucaccaGCCUcaGGGACCUu -3' miRNA: 3'- -CGUCCCGG--CGGU-------UCG------UGGA--UUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 50918 | 0.72 | 0.458822 |
Target: 5'- gGCcGGuCCaGUCAGGCGCgUGGGACCCa -3' miRNA: 3'- -CGuCCcGG-CGGUUCGUGgAUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 5324 | 0.71 | 0.477843 |
Target: 5'- gGCGGGGUCGUCGuGCuCC-AGGGCCUu -3' miRNA: 3'- -CGUCCCGGCGGUuCGuGGaUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 79123 | 0.69 | 0.623538 |
Target: 5'- uCAGGGUCGCUuacgaggagguccguGAGgACgUAGGGCCUg -3' miRNA: 3'- cGUCCCGGCGG---------------UUCgUGgAUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 70906 | 0.69 | 0.608968 |
Target: 5'- cGCAGGcUCGCCAuucuCGCuCUGAGACCg -3' miRNA: 3'- -CGUCCcGGCGGUuc--GUG-GAUUCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 79718 | 0.69 | 0.608968 |
Target: 5'- aGCAGGGUacgaaaggguacuugGCCuuguugggGAGCAgguuggcCCUGAGGCCCg -3' miRNA: 3'- -CGUCCCGg--------------CGG--------UUCGU-------GGAUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 1245 | 0.69 | 0.588219 |
Target: 5'- cGCGGGacGCCgGCUggGcCACC--AGGCCCg -3' miRNA: 3'- -CGUCC--CGG-CGGuuC-GUGGauUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 22921 | 0.69 | 0.588219 |
Target: 5'- aGCAGGGUCGU--GGUGCUUGAGAggaCCa -3' miRNA: 3'- -CGUCCCGGCGguUCGUGGAUUCUg--GG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 56131 | 0.7 | 0.567602 |
Target: 5'- cCAGGGCCGCguacggcuacgCGGGCcCCgugucuGGCCCa -3' miRNA: 3'- cGUCCCGGCG-----------GUUCGuGGauu---CUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 11687 | 0.7 | 0.566576 |
Target: 5'- aGgAGGGCCGuCCAGGacgacccCGCCUuuGGCCa -3' miRNA: 3'- -CgUCCCGGC-GGUUC-------GUGGAuuCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 89433 | 0.7 | 0.526982 |
Target: 5'- gGCA-GGUCGUCAAGUGCCUgGAGGCUa -3' miRNA: 3'- -CGUcCCGGCGGUUCGUGGA-UUCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 15581 | 0.71 | 0.507077 |
Target: 5'- cGCAGGGUCGCCGgcguGguCCUAAuuGACgCu -3' miRNA: 3'- -CGUCCCGGCGGUu---CguGGAUU--CUGgG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 42501 | 0.71 | 0.497244 |
Target: 5'- aGgAGGGCCGCCAuGC-UCUGgugguGGACCg -3' miRNA: 3'- -CgUCCCGGCGGUuCGuGGAU-----UCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 64130 | 0.71 | 0.497244 |
Target: 5'- uCAGGGa-GCCGGGUAUC-AGGGCCCu -3' miRNA: 3'- cGUCCCggCGGUUCGUGGaUUCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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