Results 101 - 116 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 36397 | 0.68 | 0.675521 |
Target: 5'- cGCAGaGGCCGCCGcgaggguccucuccaAGUacgGCCUcAAGGUCCg -3' miRNA: 3'- -CGUC-CCGGCGGU---------------UCG---UGGA-UUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 98353 | 0.68 | 0.671381 |
Target: 5'- uCGGGGCUGCCAugauCACCaGGGACa- -3' miRNA: 3'- cGUCCCGGCGGUuc--GUGGaUUCUGgg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 15949 | 0.68 | 0.671381 |
Target: 5'- aCAGGGCCuCUugGAGCGCCUcu--CCCg -3' miRNA: 3'- cGUCCCGGcGG--UUCGUGGAuucuGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 1328 | 0.68 | 0.661011 |
Target: 5'- cGCGGaGGUCGCCAuGGCcuucucGCCUcugucaAAGACCg -3' miRNA: 3'- -CGUC-CCGGCGGU-UCG------UGGA------UUCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 98709 | 0.68 | 0.650615 |
Target: 5'- aCAGGGCCGUgAA-CGCC---GGCCCg -3' miRNA: 3'- cGUCCCGGCGgUUcGUGGauuCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 86369 | 0.68 | 0.650615 |
Target: 5'- aGCAGGaGCCuGaaGAGCAgCCUGAGgagucuguugaGCCCg -3' miRNA: 3'- -CGUCC-CGG-CggUUCGU-GGAUUC-----------UGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 1014 | 0.68 | 0.640205 |
Target: 5'- -gGGGGCUGC--AGCGCCUucacACCCa -3' miRNA: 3'- cgUCCCGGCGguUCGUGGAuuc-UGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 27989 | 0.68 | 0.640205 |
Target: 5'- cCAGGGCCuGCCcGGCcGCCUccuuuGCCCu -3' miRNA: 3'- cGUCCCGG-CGGuUCG-UGGAuuc--UGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 79123 | 0.69 | 0.623538 |
Target: 5'- uCAGGGUCGCUuacgaggagguccguGAGgACgUAGGGCCUg -3' miRNA: 3'- cGUCCCGGCGG---------------UUCgUGgAUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 70906 | 0.69 | 0.608968 |
Target: 5'- cGCAGGcUCGCCAuucuCGCuCUGAGACCg -3' miRNA: 3'- -CGUCCcGGCGGUuc--GUG-GAUUCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 79718 | 0.69 | 0.608968 |
Target: 5'- aGCAGGGUacgaaaggguacuugGCCuuguugggGAGCAgguuggcCCUGAGGCCCg -3' miRNA: 3'- -CGUCCCGg--------------CGG--------UUCGU-------GGAUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 1245 | 0.69 | 0.588219 |
Target: 5'- cGCGGGacGCCgGCUggGcCACC--AGGCCCg -3' miRNA: 3'- -CGUCC--CGG-CGGuuC-GUGGauUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 22921 | 0.69 | 0.588219 |
Target: 5'- aGCAGGGUCGU--GGUGCUUGAGAggaCCa -3' miRNA: 3'- -CGUCCCGGCGguUCGUGGAUUCUg--GG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 56131 | 0.7 | 0.567602 |
Target: 5'- cCAGGGCCGCguacggcuacgCGGGCcCCgugucuGGCCCa -3' miRNA: 3'- cGUCCCGGCG-----------GUUCGuGGauu---CUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 11687 | 0.7 | 0.566576 |
Target: 5'- aGgAGGGCCGuCCAGGacgacccCGCCUuuGGCCa -3' miRNA: 3'- -CgUCCCGGC-GGUUC-------GUGGAuuCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 72881 | 0.81 | 0.124591 |
Target: 5'- uGUAGGGCCcuCUggGCcCCUGGGACCCg -3' miRNA: 3'- -CGUCCCGGc-GGuuCGuGGAUUCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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