miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 1245 0.69 0.588219
Target:  5'- cGCGGGacGCCgGCUggGcCACC--AGGCCCg -3'
miRNA:   3'- -CGUCC--CGG-CGGuuC-GUGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 11687 0.7 0.566576
Target:  5'- aGgAGGGCCGuCCAGGacgacccCGCCUuuGGCCa -3'
miRNA:   3'- -CgUCCCGGC-GGUUC-------GUGGAuuCUGGg -5'
27170 5' -57.2 NC_005832.1 + 24726 0.72 0.422041
Target:  5'- -aAGGGCCGCCc-GCugCUcagGAGAgCCa -3'
miRNA:   3'- cgUCCCGGCGGuuCGugGA---UUCUgGG- -5'
27170 5' -57.2 NC_005832.1 + 94186 0.78 0.198708
Target:  5'- uCAGGGCCGCCAcggcguGCGCCUAuaucuuuCCCg -3'
miRNA:   3'- cGUCCCGGCGGUu-----CGUGGAUucu----GGG- -5'
27170 5' -57.2 NC_005832.1 + 89851 0.68 0.68172
Target:  5'- uGCAacGcGCUGCCGGGCAUCaAGGACgCCg -3'
miRNA:   3'- -CGU--CcCGGCGGUUCGUGGaUUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 1014 0.68 0.640205
Target:  5'- -gGGGGCUGC--AGCGCCUucacACCCa -3'
miRNA:   3'- cgUCCCGGCGguUCGUGGAuuc-UGGG- -5'
27170 5' -57.2 NC_005832.1 + 15581 0.71 0.507077
Target:  5'- cGCAGGGUCGCCGgcguGguCCUAAuuGACgCu -3'
miRNA:   3'- -CGUCCCGGCGGUu---CguGGAUU--CUGgG- -5'
27170 5' -57.2 NC_005832.1 + 72779 0.78 0.193737
Target:  5'- --uGGGCCGUCGGGCcCCgcGGGCCCa -3'
miRNA:   3'- cguCCCGGCGGUUCGuGGauUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 27989 0.68 0.640205
Target:  5'- cCAGGGCCuGCCcGGCcGCCUccuuuGCCCu -3'
miRNA:   3'- cGUCCCGG-CGGuUCG-UGGAuuc--UGGG- -5'
27170 5' -57.2 NC_005832.1 + 7231 0.78 0.184119
Target:  5'- cGCuGGucaCCGCCGGGgACCUGAGACCUg -3'
miRNA:   3'- -CGuCCc--GGCGGUUCgUGGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 89433 0.7 0.526982
Target:  5'- gGCA-GGUCGUCAAGUGCCUgGAGGCUa -3'
miRNA:   3'- -CGUcCCGGCGGUUCGUGGA-UUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 79718 0.69 0.608968
Target:  5'- aGCAGGGUacgaaaggguacuugGCCuuguugggGAGCAgguuggcCCUGAGGCCCg -3'
miRNA:   3'- -CGUCCCGg--------------CGG--------UUCGU-------GGAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 5324 0.71 0.477843
Target:  5'- gGCGGGGUCGUCGuGCuCC-AGGGCCUu -3'
miRNA:   3'- -CGUCCCGGCGGUuCGuGGaUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 54255 0.72 0.449465
Target:  5'- gGCAGGG-CGUCGggagggggAGCGCCggauguaAAGACCCu -3'
miRNA:   3'- -CGUCCCgGCGGU--------UCGUGGa------UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 81293 0.73 0.378656
Target:  5'- gGCAGGG--GCCAcGGCACCgcAAGGCCCc -3'
miRNA:   3'- -CGUCCCggCGGU-UCGUGGa-UUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 26596 0.75 0.301285
Target:  5'- gGCgAGGGCCGCCGGGUGgCU---GCCCg -3'
miRNA:   3'- -CG-UCCCGGCGGUUCGUgGAuucUGGG- -5'
27170 5' -57.2 NC_005832.1 + 100301 0.67 0.712442
Target:  5'- cCGGGGuCCGgCAAGUccacCCUGaucaAGGCCCu -3'
miRNA:   3'- cGUCCC-GGCgGUUCGu---GGAU----UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 56953 0.68 0.68172
Target:  5'- -aAGGccGUCGCCAcucagAGCGCCcAAGACCa -3'
miRNA:   3'- cgUCC--CGGCGGU-----UCGUGGaUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 15949 0.68 0.671381
Target:  5'- aCAGGGCCuCUugGAGCGCCUcu--CCCg -3'
miRNA:   3'- cGUCCCGGcGG--UUCGUGGAuucuGGG- -5'
27170 5' -57.2 NC_005832.1 + 86369 0.68 0.650615
Target:  5'- aGCAGGaGCCuGaaGAGCAgCCUGAGgagucuguugaGCCCg -3'
miRNA:   3'- -CGUCC-CGG-CggUUCGU-GGAUUC-----------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.