miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27170 5' -57.2 NC_005832.1 + 98305 0.66 0.7621
Target:  5'- cGguGGGCCugaGCCu-GU-CCUGGGGCCa -3'
miRNA:   3'- -CguCCCGG---CGGuuCGuGGAUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 98353 0.68 0.671381
Target:  5'- uCGGGGCUGCCAugauCACCaGGGACa- -3'
miRNA:   3'- cGUCCCGGCGGUuc--GUGGaUUCUGgg -5'
27170 5' -57.2 NC_005832.1 + 15581 0.71 0.507077
Target:  5'- cGCAGGGUCGCCGgcguGguCCUAAuuGACgCu -3'
miRNA:   3'- -CGUCCCGGCGGUu---CguGGAUU--CUGgG- -5'
27170 5' -57.2 NC_005832.1 + 74573 0.66 0.760162
Target:  5'- cCAGGcCCGUCAGGUACUUuagccucuuuacGGACCCc -3'
miRNA:   3'- cGUCCcGGCGGUUCGUGGAu-----------UCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 42501 0.71 0.497244
Target:  5'- aGgAGGGCCGCCAuGC-UCUGgugguGGACCg -3'
miRNA:   3'- -CgUCCCGGCGGUuCGuGGAU-----UCUGGg -5'
27170 5' -57.2 NC_005832.1 + 42611 0.66 0.781195
Target:  5'- ---cGGCCuGCUucGCGCCUucGGCCUg -3'
miRNA:   3'- cgucCCGG-CGGuuCGUGGAuuCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 11687 0.7 0.566576
Target:  5'- aGgAGGGCCGuCCAGGacgacccCGCCUuuGGCCa -3'
miRNA:   3'- -CgUCCCGGC-GGUUC-------GUGGAuuCUGGg -5'
27170 5' -57.2 NC_005832.1 + 10013 0.66 0.781195
Target:  5'- cGCGGaGGCCGUgGcuCACgUGAGGCUg -3'
miRNA:   3'- -CGUC-CCGGCGgUucGUGgAUUCUGGg -5'
27170 5' -57.2 NC_005832.1 + 36925 0.66 0.781195
Target:  5'- gGUAGGaGCCGCgAA-CGagUAGGGCCCg -3'
miRNA:   3'- -CGUCC-CGGCGgUUcGUggAUUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 78732 0.66 0.771712
Target:  5'- -aGGGGCacgaGCCGgugGGCGCCgcAGAgUCCa -3'
miRNA:   3'- cgUCCCGg---CGGU---UCGUGGauUCU-GGG- -5'
27170 5' -57.2 NC_005832.1 + 11938 0.66 0.771712
Target:  5'- aGCccGGCCagaGCCAgGGCACCUuc-ACCCu -3'
miRNA:   3'- -CGucCCGG---CGGU-UCGUGGAuucUGGG- -5'
27170 5' -57.2 NC_005832.1 + 54113 0.66 0.7621
Target:  5'- cCAGGGCCaugaaggucuuGCCGaagccgggagGGCACUUGAGcaugcaguACCCc -3'
miRNA:   3'- cGUCCCGG-----------CGGU----------UCGUGGAUUC--------UGGG- -5'
27170 5' -57.2 NC_005832.1 + 56614 0.66 0.7621
Target:  5'- -aGGGGagaUGCCAAG-GCCUcGGGCCUg -3'
miRNA:   3'- cgUCCCg--GCGGUUCgUGGAuUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 56278 0.66 0.752368
Target:  5'- cCAcGGCCGUCAAGCuCCagGAGACgCu -3'
miRNA:   3'- cGUcCCGGCGGUUCGuGGa-UUCUGgG- -5'
27170 5' -57.2 NC_005832.1 + 101879 0.66 0.752368
Target:  5'- -gAGGGCCGggAAGgGCUU-GGACCCc -3'
miRNA:   3'- cgUCCCGGCggUUCgUGGAuUCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 40956 0.68 0.692015
Target:  5'- gGCAGGGUgGCuccCAGGUccgGCCU--GGCCCu -3'
miRNA:   3'- -CGUCCCGgCG---GUUCG---UGGAuuCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 89851 0.68 0.68172
Target:  5'- uGCAacGcGCUGCCGGGCAUCaAGGACgCCg -3'
miRNA:   3'- -CGU--CcCGGCGGUUCGUGGaUUCUG-GG- -5'
27170 5' -57.2 NC_005832.1 + 98709 0.68 0.650615
Target:  5'- aCAGGGCCGUgAA-CGCC---GGCCCg -3'
miRNA:   3'- cGUCCCGGCGgUUcGUGGauuCUGGG- -5'
27170 5' -57.2 NC_005832.1 + 27989 0.68 0.640205
Target:  5'- cCAGGGCCuGCCcGGCcGCCUccuuuGCCCu -3'
miRNA:   3'- cGUCCCGG-CGGuUCG-UGGAuuc--UGGG- -5'
27170 5' -57.2 NC_005832.1 + 1245 0.69 0.588219
Target:  5'- cGCGGGacGCCgGCUggGcCACC--AGGCCCg -3'
miRNA:   3'- -CGUCC--CGG-CGGuuC-GUGGauUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.