Results 61 - 80 of 116 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 91469 | 0.66 | 0.752368 |
Target: 5'- gGCAGGGUCaCCAGGC-UCgcAGACUa -3' miRNA: 3'- -CGUCCCGGcGGUUCGuGGauUCUGGg -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 101879 | 0.66 | 0.752368 |
Target: 5'- -gAGGGCCGggAAGgGCUU-GGACCCc -3' miRNA: 3'- cgUCCCGGCggUUCgUGGAuUCUGGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 36141 | 0.66 | 0.752368 |
Target: 5'- aGCucGGCCGUCAGGCcCuCUAGGcacuacaacGCCCc -3' miRNA: 3'- -CGucCCGGCGGUUCGuG-GAUUC---------UGGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 56278 | 0.66 | 0.752368 |
Target: 5'- cCAcGGCCGUCAAGCuCCagGAGACgCu -3' miRNA: 3'- cGUcCCGGCGGUUCGuGGa-UUCUGgG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 98305 | 0.66 | 0.7621 |
Target: 5'- cGguGGGCCugaGCCu-GU-CCUGGGGCCa -3' miRNA: 3'- -CguCCCGG---CGGuuCGuGGAUUCUGGg -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 83431 | 0.66 | 0.7621 |
Target: 5'- -gAGGGCCGgCGGGgACauagaagAGGGCCUg -3' miRNA: 3'- cgUCCCGGCgGUUCgUGga-----UUCUGGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 54113 | 0.66 | 0.7621 |
Target: 5'- cCAGGGCCaugaaggucuuGCCGaagccgggagGGCACUUGAGcaugcaguACCCc -3' miRNA: 3'- cGUCCCGG-----------CGGU----------UCGUGGAUUC--------UGGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 7411 | 0.66 | 0.7621 |
Target: 5'- aCAGGaCCGCCGc-CGCgUAGGACCUu -3' miRNA: 3'- cGUCCcGGCGGUucGUGgAUUCUGGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 10955 | 0.66 | 0.771712 |
Target: 5'- cCGGGGaggUGCUgggAGGCACCggcauGACCCa -3' miRNA: 3'- cGUCCCg--GCGG---UUCGUGGauu--CUGGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 39936 | 0.67 | 0.742527 |
Target: 5'- cCAGGcGCCccGCUAGG-ACCgguuGGACCCa -3' miRNA: 3'- cGUCC-CGG--CGGUUCgUGGau--UCUGGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 80915 | 0.69 | 0.577891 |
Target: 5'- aGCAgacuGGGCCGUCAAGguCCccgacguaAAGACCg -3' miRNA: 3'- -CGU----CCCGGCGGUUCguGGa-------UUCUGGg -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 8123 | 0.67 | 0.712442 |
Target: 5'- aGCAGGGCgGCCuucgagGAGUcCCUAgauauccugacgGGAgCCg -3' miRNA: 3'- -CGUCCCGgCGG------UUCGuGGAU------------UCUgGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 91371 | 0.67 | 0.732586 |
Target: 5'- gGCGGcGGUaaaGUCGuAGCGCCUAaagaacacGGACCUg -3' miRNA: 3'- -CGUC-CCGg--CGGU-UCGUGGAU--------UCUGGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 19730 | 0.66 | 0.752368 |
Target: 5'- -gGGGGaCCGUCAGGC-CCaGGGGCUUu -3' miRNA: 3'- cgUCCC-GGCGGUUCGuGGaUUCUGGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 89296 | 0.66 | 0.752368 |
Target: 5'- cCAGuauaGCCuCCAGGCACUUGAcGACCUg -3' miRNA: 3'- cGUCc---CGGcGGUUCGUGGAUU-CUGGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 79890 | 0.72 | 0.422041 |
Target: 5'- -gAGGGCgGCCAug-GCCUcGGACCCu -3' miRNA: 3'- cgUCCCGgCGGUucgUGGAuUCUGGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 50779 | 0.66 | 0.752368 |
Target: 5'- cGCcccuGGGUC-CCAcGCGCCUGacuGGACCg -3' miRNA: 3'- -CGu---CCCGGcGGUuCGUGGAU---UCUGGg -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 87228 | 0.67 | 0.722554 |
Target: 5'- aCAGGGCCaCCcucacccugGAGaGCCUGAGGgCCa -3' miRNA: 3'- cGUCCCGGcGG---------UUCgUGGAUUCUgGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 12991 | 0.69 | 0.598581 |
Target: 5'- uCGGGGuCCGUCAGGCugggguCC--AGGCCCc -3' miRNA: 3'- cGUCCC-GGCGGUUCGu-----GGauUCUGGG- -5' |
|||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 97115 | 0.69 | 0.588219 |
Target: 5'- aGCA-GGCCGCCGcgguGGC-CCUGAGGgCa -3' miRNA: 3'- -CGUcCCGGCGGU----UCGuGGAUUCUgGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home