Results 81 - 100 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27170 | 5' | -57.2 | NC_005832.1 | + | 78353 | 0.66 | 0.752368 |
Target: 5'- cGCGGcGGCCGUgCAGGacaGCCUcguucacgucGACCCa -3' miRNA: 3'- -CGUC-CCGGCG-GUUCg--UGGAuu--------CUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 83278 | 0.68 | 0.640205 |
Target: 5'- gGCGGGGCCaaaGAGCuCC--AGGCCCu -3' miRNA: 3'- -CGUCCCGGcggUUCGuGGauUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 91318 | 0.66 | 0.771712 |
Target: 5'- aGCuuGGCCaugacgGCCGAGUagucugcgaGCCUGGuGACCCu -3' miRNA: 3'- -CGucCCGG------CGGUUCG---------UGGAUU-CUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 72297 | 0.66 | 0.771712 |
Target: 5'- cCAGGGgCGaCCAGGgGCCgcaagGAGACa- -3' miRNA: 3'- cGUCCCgGC-GGUUCgUGGa----UUCUGgg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 49370 | 0.66 | 0.771712 |
Target: 5'- gGCGuGcGCCGCCAuGUcccGCCUGaccuccucGGACCCu -3' miRNA: 3'- -CGUcC-CGGCGGUuCG---UGGAU--------UCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 103983 | 0.66 | 0.780253 |
Target: 5'- -gAGGGCCGCCGcggacgccgugggGGUagacaacaugGCCUGu-GCCCa -3' miRNA: 3'- cgUCCCGGCGGU-------------UCG----------UGGAUucUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 9340 | 0.66 | 0.781195 |
Target: 5'- cUAGGGuguccucguCCGCCGGGUuccACCUAcGGCCg -3' miRNA: 3'- cGUCCC---------GGCGGUUCG---UGGAUuCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 29421 | 0.66 | 0.781195 |
Target: 5'- aGCAGua-CGCacgaGAGCGCC-GGGACCCu -3' miRNA: 3'- -CGUCccgGCGg---UUCGUGGaUUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 55653 | 0.66 | 0.781195 |
Target: 5'- cGCAuGGaCCGCCGuGUcguCCUuauAGGCCCa -3' miRNA: 3'- -CGUcCC-GGCGGUuCGu--GGAu--UCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 42605 | 0.66 | 0.79054 |
Target: 5'- gGCGGagacGCUGCgGAGCACCUGGGGu-- -3' miRNA: 3'- -CGUCc---CGGCGgUUCGUGGAUUCUggg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 50779 | 0.66 | 0.752368 |
Target: 5'- cGCcccuGGGUC-CCAcGCGCCUGacuGGACCg -3' miRNA: 3'- -CGu---CCCGGcGGUuCGUGGAU---UCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 89296 | 0.66 | 0.752368 |
Target: 5'- cCAGuauaGCCuCCAGGCACUUGAcGACCUg -3' miRNA: 3'- cGUCc---CGGcGGUUCGUGGAUU-CUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 1520 | 0.68 | 0.659972 |
Target: 5'- uCGGGaGCCGCC-AGCcucacugccgaugGCCUGAG-CCUg -3' miRNA: 3'- cGUCC-CGGCGGuUCG-------------UGGAUUCuGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 62732 | 0.68 | 0.670346 |
Target: 5'- cGCAGGaGaCUGCCuuuauuaAGGCACUcGAGGCCa -3' miRNA: 3'- -CGUCC-C-GGCGG-------UUCGUGGaUUCUGGg -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 27861 | 0.67 | 0.702259 |
Target: 5'- -aGGaGGCgGCCGGGCAggcCCU-GGACCUc -3' miRNA: 3'- cgUC-CCGgCGGUUCGU---GGAuUCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 81135 | 0.67 | 0.702259 |
Target: 5'- aGgAGGGCCGUCGuagacugggaacGGgGCCUugcGGugCCg -3' miRNA: 3'- -CgUCCCGGCGGU------------UCgUGGAu--UCugGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 8123 | 0.67 | 0.712442 |
Target: 5'- aGCAGGGCgGCCuucgagGAGUcCCUAgauauccugacgGGAgCCg -3' miRNA: 3'- -CGUCCCGgCGG------UUCGuGGAU------------UCUgGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 87228 | 0.67 | 0.722554 |
Target: 5'- aCAGGGCCaCCcucacccugGAGaGCCUGAGGgCCa -3' miRNA: 3'- cGUCCCGGcGG---------UUCgUGGAUUCUgGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 91371 | 0.67 | 0.732586 |
Target: 5'- gGCGGcGGUaaaGUCGuAGCGCCUAaagaacacGGACCUg -3' miRNA: 3'- -CGUC-CCGg--CGGU-UCGUGGAU--------UCUGGG- -5' |
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27170 | 5' | -57.2 | NC_005832.1 | + | 19730 | 0.66 | 0.752368 |
Target: 5'- -gGGGGaCCGUCAGGC-CCaGGGGCUUu -3' miRNA: 3'- cgUCCC-GGCGGUUCGuGGaUUCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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