Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 73129 | 0.69 | 0.568944 |
Target: 5'- cCUUUGGGGCcucUGUCuccccuuuUCCCAUuGGGGCCc -3' miRNA: 3'- -GGGACUCCG---ACAG--------AGGGUGuCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 78956 | 0.69 | 0.538828 |
Target: 5'- aCCCUGAGGCacGUCgaagguaaUCaCCGCGGgguAGGUCa -3' miRNA: 3'- -GGGACUCCGa-CAG--------AG-GGUGUC---UCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 79143 | 0.72 | 0.399153 |
Target: 5'- --gUGAGGCcuacGUCUCCCugAGggugaGGGCCa -3' miRNA: 3'- gggACUCCGa---CAGAGGGugUC-----UCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 79444 | 0.67 | 0.660941 |
Target: 5'- uUCUGGGGCUuugGaUUUUCugGGAGGCCu -3' miRNA: 3'- gGGACUCCGA---CaGAGGGugUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 79866 | 0.69 | 0.568944 |
Target: 5'- uUCCUGAGGaagaUGagggCUCCCucugGCAGGGGUUc -3' miRNA: 3'- -GGGACUCCg---ACa---GAGGG----UGUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 80467 | 0.66 | 0.73145 |
Target: 5'- aUCCUGAgaacGGacacugGUUUCCC-CAGGGGCa -3' miRNA: 3'- -GGGACU----CCga----CAGAGGGuGUCUCCGg -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 80995 | 0.67 | 0.64968 |
Target: 5'- aCCUGGGGUUaaagaccGUCaUCCCGucCAG-GGCCc -3' miRNA: 3'- gGGACUCCGA-------CAG-AGGGU--GUCuCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 81310 | 0.69 | 0.548812 |
Target: 5'- aUCC-GA-GCUcgGUCUCUgGCAGGGGCCa -3' miRNA: 3'- -GGGaCUcCGA--CAGAGGgUGUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 81612 | 0.66 | 0.73145 |
Target: 5'- -aCUGcauGGGCU--UUCCCuCGGAGGCCc -3' miRNA: 3'- ggGAC---UCCGAcaGAGGGuGUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 84275 | 0.67 | 0.640453 |
Target: 5'- uCCCUGGGcgcgauGCUGUCcgcUCCCGuCGuGAGaGCCu -3' miRNA: 3'- -GGGACUC------CGACAG---AGGGU-GU-CUC-CGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 85778 | 0.68 | 0.579081 |
Target: 5'- aCUCUGAGGCUGaagCcCCCGCAccuGCCa -3' miRNA: 3'- -GGGACUCCGACa--GaGGGUGUcucCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 91778 | 0.71 | 0.425276 |
Target: 5'- gCCUGAcgGGCUuaGUCaagaccacCCCGCAGAGGUCc -3' miRNA: 3'- gGGACU--CCGA--CAGa-------GGGUGUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 92532 | 0.71 | 0.416455 |
Target: 5'- gCUCUG-GGCUGcCUCCUccucGCGGGGuGCCu -3' miRNA: 3'- -GGGACuCCGACaGAGGG----UGUCUC-CGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 93732 | 0.67 | 0.680319 |
Target: 5'- gCCCUGAGcaUGaucgCUCCCGCuagcacgGGAGGCg -3' miRNA: 3'- -GGGACUCcgACa---GAGGGUG-------UCUCCGg -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 95568 | 0.74 | 0.298487 |
Target: 5'- gCCgacuacggGAGGCUGUCUCCgaUACGGucGCCg -3' miRNA: 3'- gGGa-------CUCCGACAGAGG--GUGUCucCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 97195 | 0.66 | 0.711599 |
Target: 5'- cUCCUG-GGCcuUGcCUCCgagcacgucguaCugGGAGGCCa -3' miRNA: 3'- -GGGACuCCG--ACaGAGG------------GugUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 98069 | 0.68 | 0.609692 |
Target: 5'- aCCgaaggUGAGGaggGUCUCCa--AGAGGCCc -3' miRNA: 3'- gGG-----ACUCCga-CAGAGGgugUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 100394 | 0.72 | 0.382319 |
Target: 5'- aCCCauaaaggaaaUGAGGCUGUCUgaCCu--GAGGCCc -3' miRNA: 3'- -GGG----------ACUCCGACAGAg-GGuguCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 102365 | 0.72 | 0.37408 |
Target: 5'- gCC-GAGGCgGUCguagCCAUGGAGGCCg -3' miRNA: 3'- gGGaCUCCGaCAGag--GGUGUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 103783 | 0.73 | 0.350097 |
Target: 5'- uCUCUGuGGUUGacggCUCCCGacuguauguCGGAGGCCa -3' miRNA: 3'- -GGGACuCCGACa---GAGGGU---------GUCUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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