miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27176 5' -58.6 NC_005832.1 + 16729 0.66 0.711599
Target:  5'- gCCCUGGcGGUgga-UCCCAUcaAGAGcGCCa -3'
miRNA:   3'- -GGGACU-CCGacagAGGGUG--UCUC-CGG- -5'
27176 5' -58.6 NC_005832.1 + 97195 0.66 0.711599
Target:  5'- cUCCUG-GGCcuUGcCUCCgagcacgucguaCugGGAGGCCa -3'
miRNA:   3'- -GGGACuCCG--ACaGAGG------------GugUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 66310 0.67 0.671154
Target:  5'- aCCUGucuaGCUGUCccUCCCACcccaAGAGGUUc -3'
miRNA:   3'- gGGACuc--CGACAG--AGGGUG----UCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 9996 0.67 0.640453
Target:  5'- aCgUGAGGCUGga--CgGCGGAGGCg -3'
miRNA:   3'- gGgACUCCGACagagGgUGUCUCCGg -5'
27176 5' -58.6 NC_005832.1 + 20486 0.66 0.750956
Target:  5'- cCCUUGAuGCUGUaaCCCGCcacccaAGGGGCg -3'
miRNA:   3'- -GGGACUcCGACAgaGGGUG------UCUCCGg -5'
27176 5' -58.6 NC_005832.1 + 81612 0.66 0.73145
Target:  5'- -aCUGcauGGGCU--UUCCCuCGGAGGCCc -3'
miRNA:   3'- ggGAC---UCCGAcaGAGGGuGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 73085 0.66 0.710598
Target:  5'- aCCCUGGGGUccGUCgggaCCUACGGgacccuguauaccGGGCUc -3'
miRNA:   3'- -GGGACUCCGa-CAGa---GGGUGUC-------------UCCGG- -5'
27176 5' -58.6 NC_005832.1 + 84275 0.67 0.640453
Target:  5'- uCCCUGGGcgcgauGCUGUCcgcUCCCGuCGuGAGaGCCu -3'
miRNA:   3'- -GGGACUC------CGACAG---AGGGU-GU-CUC-CGG- -5'
27176 5' -58.6 NC_005832.1 + 4711 0.66 0.721563
Target:  5'- gCCUUGAGGCaggacuuggUGaCUUCCACgaccgaGGuGGCCa -3'
miRNA:   3'- -GGGACUCCG---------ACaGAGGGUG------UCuCCGG- -5'
27176 5' -58.6 NC_005832.1 + 29941 0.68 0.609692
Target:  5'- gCCgccaaGCUGUCUUCugaagaCACAGAGGCCu -3'
miRNA:   3'- gGGacuc-CGACAGAGG------GUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 27184 0.66 0.711599
Target:  5'- ---gGGGGCUccggguUCUCCCACGGAcguuucgcgGGCCu -3'
miRNA:   3'- gggaCUCCGAc-----AGAGGGUGUCU---------CCGG- -5'
27176 5' -58.6 NC_005832.1 + 19729 0.66 0.721563
Target:  5'- cUCCUGcGGCggGUUUCCCucuuACGGcGGGUCg -3'
miRNA:   3'- -GGGACuCCGa-CAGAGGG----UGUC-UCCGG- -5'
27176 5' -58.6 NC_005832.1 + 7722 0.66 0.701567
Target:  5'- gCUcGAGGCUcgcaGUCuuUCCCACcGuGGCCg -3'
miRNA:   3'- gGGaCUCCGA----CAG--AGGGUGuCuCCGG- -5'
27176 5' -58.6 NC_005832.1 + 93732 0.67 0.680319
Target:  5'- gCCCUGAGcaUGaucgCUCCCGCuagcacgGGAGGCg -3'
miRNA:   3'- -GGGACUCcgACa---GAGGGUG-------UCUCCGg -5'
27176 5' -58.6 NC_005832.1 + 79444 0.67 0.660941
Target:  5'- uUCUGGGGCUuugGaUUUUCugGGAGGCCu -3'
miRNA:   3'- gGGACUCCGA---CaGAGGGugUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 80995 0.67 0.64968
Target:  5'- aCCUGGGGUUaaagaccGUCaUCCCGucCAG-GGCCc -3'
miRNA:   3'- gGGACUCCGA-------CAG-AGGGU--GUCuCCGG- -5'
27176 5' -58.6 NC_005832.1 + 7942 0.66 0.741251
Target:  5'- cCCCUGAGGagcCUGUaggaCUCUaCACcgGGAGuGCCg -3'
miRNA:   3'- -GGGACUCC---GACA----GAGG-GUG--UCUC-CGG- -5'
27176 5' -58.6 NC_005832.1 + 19856 0.66 0.741251
Target:  5'- cCCCUG-GGCcugacgGUCcCCCugACGGucuuGGCCg -3'
miRNA:   3'- -GGGACuCCGa-----CAGaGGG--UGUCu---CCGG- -5'
27176 5' -58.6 NC_005832.1 + 72693 0.68 0.589256
Target:  5'- gCCCaGGGGCcccacGUC-CCCACGGGGaCCg -3'
miRNA:   3'- -GGGaCUCCGa----CAGaGGGUGUCUCcGG- -5'
27176 5' -58.6 NC_005832.1 + 36247 0.66 0.701567
Target:  5'- aCCUUGAGGCcGUaCUuggagaggaccCUCGCGGcGGCCu -3'
miRNA:   3'- -GGGACUCCGaCA-GA-----------GGGUGUCuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.