miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27176 5' -58.6 NC_005832.1 + 66310 0.67 0.671154
Target:  5'- aCCUGucuaGCUGUCccUCCCACcccaAGAGGUUc -3'
miRNA:   3'- gGGACuc--CGACAG--AGGGUG----UCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 79444 0.67 0.660941
Target:  5'- uUCUGGGGCUuugGaUUUUCugGGAGGCCu -3'
miRNA:   3'- gGGACUCCGA---CaGAGGGugUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 29511 0.67 0.650704
Target:  5'- cCCCUGGauauaGcCUCCCugaGCGGAGGCCa -3'
miRNA:   3'- -GGGACUccga-CaGAGGG---UGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 80995 0.67 0.64968
Target:  5'- aCCUGGGGUUaaagaccGUCaUCCCGucCAG-GGCCc -3'
miRNA:   3'- gGGACUCCGA-------CAG-AGGGU--GUCuCCGG- -5'
27176 5' -58.6 NC_005832.1 + 9996 0.67 0.640453
Target:  5'- aCgUGAGGCUGga--CgGCGGAGGCg -3'
miRNA:   3'- gGgACUCCGACagagGgUGUCUCCGg -5'
27176 5' -58.6 NC_005832.1 + 84275 0.67 0.640453
Target:  5'- uCCCUGGGcgcgauGCUGUCcgcUCCCGuCGuGAGaGCCu -3'
miRNA:   3'- -GGGACUC------CGACAG---AGGGU-GU-CUC-CGG- -5'
27176 5' -58.6 NC_005832.1 + 56329 0.68 0.628143
Target:  5'- gCCUGGGGaCguagcccagggccacUG-CUccuccuccuauaagaCCCACAGAGGCCa -3'
miRNA:   3'- gGGACUCC-G---------------ACaGA---------------GGGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 29941 0.68 0.609692
Target:  5'- gCCgccaaGCUGUCUUCugaagaCACAGAGGCCu -3'
miRNA:   3'- gGGacuc-CGACAGAGG------GUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 98069 0.68 0.609692
Target:  5'- aCCgaaggUGAGGaggGUCUCCa--AGAGGCCc -3'
miRNA:   3'- gGG-----ACUCCga-CAGAGGgugUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 72693 0.68 0.589256
Target:  5'- gCCCaGGGGCcccacGUC-CCCACGGGGaCCg -3'
miRNA:   3'- -GGGaCUCCGa----CAGaGGGUGUCUCcGG- -5'
27176 5' -58.6 NC_005832.1 + 10137 0.68 0.589255
Target:  5'- aCCUGGGGgUGUCccugcCCCugGGAacaGCCa -3'
miRNA:   3'- gGGACUCCgACAGa----GGGugUCUc--CGG- -5'
27176 5' -58.6 NC_005832.1 + 67088 0.68 0.579081
Target:  5'- gCCCUgGAGGCca-CUCCgUAC-GAGGCCa -3'
miRNA:   3'- -GGGA-CUCCGacaGAGG-GUGuCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 36424 0.68 0.579081
Target:  5'- uUCCgaggGAGaGCUGgcgUCCauaguCGCAGAGGCCg -3'
miRNA:   3'- -GGGa---CUC-CGACag-AGG-----GUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 47918 0.68 0.579081
Target:  5'- aCCCcGAGGCggagGUCcuggCCgAgAGGGGCUa -3'
miRNA:   3'- -GGGaCUCCGa---CAGa---GGgUgUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 85778 0.68 0.579081
Target:  5'- aCUCUGAGGCUGaagCcCCCGCAccuGCCa -3'
miRNA:   3'- -GGGACUCCGACa--GaGGGUGUcucCGG- -5'
27176 5' -58.6 NC_005832.1 + 9712 0.68 0.579081
Target:  5'- cUCCUGAcGG-UGUCUCCCGUGGAGaCCa -3'
miRNA:   3'- -GGGACU-CCgACAGAGGGUGUCUCcGG- -5'
27176 5' -58.6 NC_005832.1 + 73129 0.69 0.568944
Target:  5'- cCUUUGGGGCcucUGUCuccccuuuUCCCAUuGGGGCCc -3'
miRNA:   3'- -GGGACUCCG---ACAG--------AGGGUGuCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 79866 0.69 0.568944
Target:  5'- uUCCUGAGGaagaUGagggCUCCCucugGCAGGGGUUc -3'
miRNA:   3'- -GGGACUCCg---ACa---GAGGG----UGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 881 0.69 0.568944
Target:  5'- cCCCUGGGugugaaggcGCUGcagCCCccggcguaGCAGGGGCCg -3'
miRNA:   3'- -GGGACUC---------CGACagaGGG--------UGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 39700 0.69 0.567933
Target:  5'- cCCCUG-GGUccugccgguuccaUGUCUCCCACu--GGUCc -3'
miRNA:   3'- -GGGACuCCG-------------ACAGAGGGUGucuCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.