miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2718 3' -52.9 NC_001491.2 + 1650 0.66 0.974225
Target:  5'- aGCUuCUGGACgagccuaGCGAaGGCAUGGACc -3'
miRNA:   3'- -CGGuGACUUGg------UGUUgCCGUACCUGc -5'
2718 3' -52.9 NC_001491.2 + 8221 0.67 0.961856
Target:  5'- gGCCAUggagGAAUacaCugAugGGCcgAUGGACGa -3'
miRNA:   3'- -CGGUGa---CUUG---GugUugCCG--UACCUGC- -5'
2718 3' -52.9 NC_001491.2 + 13942 0.72 0.752451
Target:  5'- aGCCGCUGGuauagcgcGCCGgGGCuGGCGgccuUGGGCGg -3'
miRNA:   3'- -CGGUGACU--------UGGUgUUG-CCGU----ACCUGC- -5'
2718 3' -52.9 NC_001491.2 + 16849 0.66 0.96847
Target:  5'- uCCACgaGAAaugUUACcGCGGCAUGGugGu -3'
miRNA:   3'- cGGUGa-CUU---GGUGuUGCCGUACCugC- -5'
2718 3' -52.9 NC_001491.2 + 20141 0.69 0.895649
Target:  5'- gGCgGgUGGAUUACAAcCGGCGggGGACGa -3'
miRNA:   3'- -CGgUgACUUGGUGUU-GCCGUa-CCUGC- -5'
2718 3' -52.9 NC_001491.2 + 33456 0.66 0.974225
Target:  5'- gGCCAgaGAguugACCAgGGCucGCAUGGACc -3'
miRNA:   3'- -CGGUgaCU----UGGUgUUGc-CGUACCUGc -5'
2718 3' -52.9 NC_001491.2 + 44598 0.66 0.97753
Target:  5'- uGCCACUGuccgauuguguggcGCCGCuGGCGGCcuuugaaGUGGAUu -3'
miRNA:   3'- -CGGUGACu-------------UGGUG-UUGCCG-------UACCUGc -5'
2718 3' -52.9 NC_001491.2 + 45125 0.67 0.961856
Target:  5'- gGCCGCggcgGGggccGCCGCAGauuUGGCcgGGGCc -3'
miRNA:   3'- -CGGUGa---CU----UGGUGUU---GCCGuaCCUGc -5'
2718 3' -52.9 NC_001491.2 + 45191 0.67 0.961856
Target:  5'- gGCCGCggcgGGggccGCCGCAGauuUGGCcgGGGCc -3'
miRNA:   3'- -CGGUGa---CU----UGGUGUU---GCCGuaCCUGc -5'
2718 3' -52.9 NC_001491.2 + 45257 0.67 0.961856
Target:  5'- gGCCGCggcgGGggccGCCGCAGauuUGGCcgGGGCc -3'
miRNA:   3'- -CGGUGa---CU----UGGUGUU---GCCGuaCCUGc -5'
2718 3' -52.9 NC_001491.2 + 53313 0.73 0.719597
Target:  5'- aGCCACgccUucgacaguacagacGAACC-CGACGGUGUGGACGg -3'
miRNA:   3'- -CGGUG---A--------------CUUGGuGUUGCCGUACCUGC- -5'
2718 3' -52.9 NC_001491.2 + 64734 0.77 0.526956
Target:  5'- cGCgGCUGGggaaACCGCGGCcucGGCGUGGGCa -3'
miRNA:   3'- -CGgUGACU----UGGUGUUG---CCGUACCUGc -5'
2718 3' -52.9 NC_001491.2 + 68577 0.68 0.936438
Target:  5'- aGCCACgguguuugUGAGCCGCGccgcggGCGGCucaaacggGGugGu -3'
miRNA:   3'- -CGGUG--------ACUUGGUGU------UGCCGua------CCugC- -5'
2718 3' -52.9 NC_001491.2 + 68876 0.7 0.851429
Target:  5'- cGCCAUaGAgccGCCGCAGCGGcCAUaGACa -3'
miRNA:   3'- -CGGUGaCU---UGGUGUUGCC-GUAcCUGc -5'
2718 3' -52.9 NC_001491.2 + 71139 0.66 0.96847
Target:  5'- -aCACUGGACaCACGagGCGGUAUgagGGAUa -3'
miRNA:   3'- cgGUGACUUG-GUGU--UGCCGUA---CCUGc -5'
2718 3' -52.9 NC_001491.2 + 85712 0.73 0.728656
Target:  5'- cGCCACacgucucUGGgggugucuccuccgGCCACGGCGGCGUGGcccACGu -3'
miRNA:   3'- -CGGUG-------ACU--------------UGGUGUUGCCGUACC---UGC- -5'
2718 3' -52.9 NC_001491.2 + 103981 0.67 0.961856
Target:  5'- uGCCGCUGAACCcaaacACAAacuUGcGCAUGcGCGu -3'
miRNA:   3'- -CGGUGACUUGG-----UGUU---GC-CGUACcUGC- -5'
2718 3' -52.9 NC_001491.2 + 114634 0.69 0.902211
Target:  5'- cGCCGCgcaGAGCCACcgcGCGGCcaaccgauggGGACu -3'
miRNA:   3'- -CGGUGa--CUUGGUGu--UGCCGua--------CCUGc -5'
2718 3' -52.9 NC_001491.2 + 114726 0.67 0.953935
Target:  5'- cGCCAgcgcgucCUGcccGACUACGACGGCugcaaGGACa -3'
miRNA:   3'- -CGGU-------GAC---UUGGUGUUGCCGua---CCUGc -5'
2718 3' -52.9 NC_001491.2 + 116346 0.69 0.902211
Target:  5'- cGCCGCUGGugcGCUACAACgccgagggGGCccGGGCc -3'
miRNA:   3'- -CGGUGACU---UGGUGUUG--------CCGuaCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.