Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2718 | 5' | -57.3 | NC_001491.2 | + | 91705 | 0.65 | 0.88603 |
Target: 5'- --aGUCUGCGccucuaucgcuagcACGGCgUCCCUGAcgcUGGCc -3' miRNA: 3'- gugCAGGUGU--------------UGCCG-AGGGGCU---ACCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 145563 | 0.66 | 0.881229 |
Target: 5'- gGC-UCCGgccCGGCGGagaagccaUCCCCGcgGGCg -3' miRNA: 3'- gUGcAGGU---GUUGCCg-------AGGGGCuaCCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 54017 | 0.66 | 0.881229 |
Target: 5'- uGCGUCCAgcGCGGCgagCCcagaCCGAcGGUu -3' miRNA: 3'- gUGCAGGUguUGCCGa--GG----GGCUaCCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 46467 | 0.66 | 0.881229 |
Target: 5'- gGCGUCCACAACGGgUUCCg------ -3' miRNA: 3'- gUGCAGGUGUUGCCgAGGGgcuaccg -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 123502 | 0.66 | 0.881229 |
Target: 5'- gUACG-CCGCGGCGGCUgC---GUGGCg -3' miRNA: 3'- -GUGCaGGUGUUGCCGAgGggcUACCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 1901 | 0.66 | 0.881229 |
Target: 5'- gACG-CCGC-GCGGgUCCUgGGUGGg -3' miRNA: 3'- gUGCaGGUGuUGCCgAGGGgCUACCg -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 69929 | 0.66 | 0.874188 |
Target: 5'- aUACGgugCCACAACcGCUUCUauaacgCGAUGGUu -3' miRNA: 3'- -GUGCa--GGUGUUGcCGAGGG------GCUACCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 145379 | 0.66 | 0.874188 |
Target: 5'- aGCGgcgCCGgAGCGGCagcUCUUCGGggUGGCg -3' miRNA: 3'- gUGCa--GGUgUUGCCG---AGGGGCU--ACCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 42096 | 0.66 | 0.874188 |
Target: 5'- gGCGgcuucCCGCAGCGGCUauaCCGGcaauuuucUGGUa -3' miRNA: 3'- gUGCa----GGUGUUGCCGAgg-GGCU--------ACCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 146312 | 0.66 | 0.866937 |
Target: 5'- cCAUGUCCGCGuaGGCgCgCCGGaGGCu -3' miRNA: 3'- -GUGCAGGUGUugCCGaGgGGCUaCCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 143180 | 0.66 | 0.859482 |
Target: 5'- aCACGUCCGCAcgAgGGCgCCCUcGUGuGUu -3' miRNA: 3'- -GUGCAGGUGU--UgCCGaGGGGcUAC-CG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 100917 | 0.66 | 0.859482 |
Target: 5'- uGCGagCuCAGCGGCccUUCCCGGgagUGGCg -3' miRNA: 3'- gUGCagGuGUUGCCG--AGGGGCU---ACCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 102473 | 0.66 | 0.851826 |
Target: 5'- aGCGUCUAUccACGGUcccucuacUCCCCGGUaaaaugucGGCg -3' miRNA: 3'- gUGCAGGUGu-UGCCG--------AGGGGCUA--------CCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 118363 | 0.66 | 0.851826 |
Target: 5'- -cCGcCgGCAGCGGCgguccuccuaCCCCGgcGGCu -3' miRNA: 3'- guGCaGgUGUUGCCGa---------GGGGCuaCCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 89582 | 0.67 | 0.843978 |
Target: 5'- gCGCGcUCCGCAGCGaGCgUCCUC--UGGUg -3' miRNA: 3'- -GUGC-AGGUGUUGC-CG-AGGGGcuACCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 146563 | 0.67 | 0.835943 |
Target: 5'- gGCGUCCcCGA--GCUCCCUGAgucugaaGGCg -3' miRNA: 3'- gUGCAGGuGUUgcCGAGGGGCUa------CCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 140106 | 0.67 | 0.827728 |
Target: 5'- aCGCGcUCCGgAGCGGCgccgggccgCCCgCGGaGGCc -3' miRNA: 3'- -GUGC-AGGUgUUGCCGa--------GGG-GCUaCCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 70052 | 0.67 | 0.827728 |
Target: 5'- -cCG-CCugAcCGGCgCCCCGcUGGCg -3' miRNA: 3'- guGCaGGugUuGCCGaGGGGCuACCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 137703 | 0.67 | 0.810788 |
Target: 5'- gGCGU-CGCGGCGGCggCCguggaCCGAgcgGGCg -3' miRNA: 3'- gUGCAgGUGUUGCCGa-GG-----GGCUa--CCG- -5' |
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2718 | 5' | -57.3 | NC_001491.2 | + | 84770 | 0.68 | 0.79322 |
Target: 5'- uGCG-CCAUAACGaacaUUCCCCaGUGGCg -3' miRNA: 3'- gUGCaGGUGUUGCc---GAGGGGcUACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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