miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27184 5' -53.2 NC_005832.1 + 90025 0.66 0.936268
Target:  5'- aGGCUggGAGGAGGAgUGaggUGGGCc -3'
miRNA:   3'- -CCGAggUUCCUCCUgAUgcaAUCCGu -5'
27184 5' -53.2 NC_005832.1 + 95588 0.66 0.936268
Target:  5'- gGGC-CCucgagAGGGAGugcgccGACUACGggAGGCu -3'
miRNA:   3'- -CCGaGG-----UUCCUC------CUGAUGCaaUCCGu -5'
27184 5' -53.2 NC_005832.1 + 36524 0.66 0.936268
Target:  5'- cGGCguacgCCAGGGccgGGGGCcacaggGCGUU-GGCGu -3'
miRNA:   3'- -CCGa----GGUUCC---UCCUGa-----UGCAAuCCGU- -5'
27184 5' -53.2 NC_005832.1 + 96497 0.66 0.936268
Target:  5'- aGGUcagCCAGGGAccuGGACUcuGCGguagAGGCc -3'
miRNA:   3'- -CCGa--GGUUCCU---CCUGA--UGCaa--UCCGu -5'
27184 5' -53.2 NC_005832.1 + 92557 0.66 0.936268
Target:  5'- cGGgUCCGAGGAcGcGACggggACGgcucUGGGCu -3'
miRNA:   3'- -CCgAGGUUCCU-C-CUGa---UGCa---AUCCGu -5'
27184 5' -53.2 NC_005832.1 + 81144 0.66 0.925535
Target:  5'- gGGCaCCAGGGAGGcCgagGCGUacucuuggaccGGGCAu -3'
miRNA:   3'- -CCGaGGUUCCUCCuGa--UGCAa----------UCCGU- -5'
27184 5' -53.2 NC_005832.1 + 63892 0.66 0.925535
Target:  5'- uGCUCCAgguaccagcugAGGAGGACggagaugGCGgucgcagagaGGGCGg -3'
miRNA:   3'- cCGAGGU-----------UCCUCCUGa------UGCaa--------UCCGU- -5'
27184 5' -53.2 NC_005832.1 + 20773 0.67 0.905544
Target:  5'- cGCUCCAccaaauuaggcugaGGGAGGGC-AgGUaUAGGCc -3'
miRNA:   3'- cCGAGGU--------------UCCUCCUGaUgCA-AUCCGu -5'
27184 5' -53.2 NC_005832.1 + 62242 0.67 0.900941
Target:  5'- uGGUUCUcAGGAGGug-GC-UUAGGCAu -3'
miRNA:   3'- -CCGAGGuUCCUCCugaUGcAAUCCGU- -5'
27184 5' -53.2 NC_005832.1 + 87709 0.67 0.900941
Target:  5'- gGGCUCC-AGGAGccUUugGUccggAGGCAc -3'
miRNA:   3'- -CCGAGGuUCCUCcuGAugCAa---UCCGU- -5'
27184 5' -53.2 NC_005832.1 + 81408 0.67 0.89893
Target:  5'- uGGC-CCAAGuGAGGGCUGCGaaagcccagacucccAGGUg -3'
miRNA:   3'- -CCGaGGUUC-CUCCUGAUGCaa-------------UCCGu -5'
27184 5' -53.2 NC_005832.1 + 9941 0.67 0.89415
Target:  5'- gGGCUCCAc---GGAC-ACGUUAGaGCAc -3'
miRNA:   3'- -CCGAGGUuccuCCUGaUGCAAUC-CGU- -5'
27184 5' -53.2 NC_005832.1 + 91775 0.68 0.879821
Target:  5'- uGCUCCAAGGuguGGGAg-GCGgu-GGCGg -3'
miRNA:   3'- cCGAGGUUCC---UCCUgaUGCaauCCGU- -5'
27184 5' -53.2 NC_005832.1 + 10454 0.68 0.879821
Target:  5'- gGGgUCCAGGGugguggccgAGGGCUugACGUUuaaggaagugAGGCAc -3'
miRNA:   3'- -CCgAGGUUCC---------UCCUGA--UGCAA----------UCCGU- -5'
27184 5' -53.2 NC_005832.1 + 6213 0.68 0.84832
Target:  5'- aGCUCCucGGGAGGGCaGgGgauGGCAg -3'
miRNA:   3'- cCGAGGu-UCCUCCUGaUgCaauCCGU- -5'
27184 5' -53.2 NC_005832.1 + 94764 0.69 0.831254
Target:  5'- aGGC-CC-AGGAGGAuCUGCGcgaGGGCc -3'
miRNA:   3'- -CCGaGGuUCCUCCU-GAUGCaa-UCCGu -5'
27184 5' -53.2 NC_005832.1 + 32730 0.69 0.82242
Target:  5'- --gUCCGGGGAGaGGCUggaggugucuGCGggAGGCAg -3'
miRNA:   3'- ccgAGGUUCCUC-CUGA----------UGCaaUCCGU- -5'
27184 5' -53.2 NC_005832.1 + 78847 0.69 0.82242
Target:  5'- gGGUUCCAGgcacguuccaccGGAGGACUuuGCGgccaggguGGCAg -3'
miRNA:   3'- -CCGAGGUU------------CCUCCUGA--UGCaau-----CCGU- -5'
27184 5' -53.2 NC_005832.1 + 49514 0.69 0.813396
Target:  5'- aGGgUCCGAGGAGGucagGCGggacauGGCGg -3'
miRNA:   3'- -CCgAGGUUCCUCCuga-UGCaau---CCGU- -5'
27184 5' -53.2 NC_005832.1 + 92145 0.71 0.72321
Target:  5'- cGGCUCCAAGGugggagaguuuuGGAggGCGgu-GGCAg -3'
miRNA:   3'- -CCGAGGUUCCu-----------CCUgaUGCaauCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.