miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27185 3' -53.8 NC_005832.1 + 7605 0.66 0.935502
Target:  5'- uGGaGGGGUCCAccuucaGCGGCAccacgcacugCCUCCu -3'
miRNA:   3'- -UC-CCCCAGGUcua---UGCUGUua--------GGAGG- -5'
27185 3' -53.8 NC_005832.1 + 39864 0.66 0.93241
Target:  5'- -uGGGG-CCAGAgggcccaaagggagACGACGGUCCcgUCUa -3'
miRNA:   3'- ucCCCCaGGUCUa-------------UGCUGUUAGG--AGG- -5'
27185 3' -53.8 NC_005832.1 + 2552 0.66 0.930297
Target:  5'- cAGGGGGUCCuuguGuAUGCcACAAccuggaggUCUCCg -3'
miRNA:   3'- -UCCCCCAGGu---C-UAUGcUGUUa-------GGAGG- -5'
27185 3' -53.8 NC_005832.1 + 32334 0.66 0.930297
Target:  5'- --cGGGUCgCAGAUAaccccgGGCAA-CCUCCa -3'
miRNA:   3'- uccCCCAG-GUCUAUg-----CUGUUaGGAGG- -5'
27185 3' -53.8 NC_005832.1 + 19723 0.66 0.930297
Target:  5'- cGGcGGGUuucCCucuUACGGCGggucGUCCUCCu -3'
miRNA:   3'- uCC-CCCA---GGucuAUGCUGU----UAGGAGG- -5'
27185 3' -53.8 NC_005832.1 + 90396 0.66 0.919122
Target:  5'- cGGGGGcCCuccu-CGACAgcuuGUCCUCg -3'
miRNA:   3'- uCCCCCaGGucuauGCUGU----UAGGAGg -5'
27185 3' -53.8 NC_005832.1 + 13007 0.67 0.906932
Target:  5'- -uGGGGUCCAGGccccuggucuUGACGAgCCUCUc -3'
miRNA:   3'- ucCCCCAGGUCUau--------GCUGUUaGGAGG- -5'
27185 3' -53.8 NC_005832.1 + 100586 0.67 0.906932
Target:  5'- cAGGGGGa-CGGucacCGGCucGUCCUCCa -3'
miRNA:   3'- -UCCCCCagGUCuau-GCUGu-UAGGAGG- -5'
27185 3' -53.8 NC_005832.1 + 103484 0.67 0.90046
Target:  5'- -cGGGGUCCAGGacUACG-CAAcugCC-CCg -3'
miRNA:   3'- ucCCCCAGGUCU--AUGCuGUUa--GGaGG- -5'
27185 3' -53.8 NC_005832.1 + 33702 0.67 0.899799
Target:  5'- cAGGGcGUCCAGGUAgGuuuuuuuACAGUCgUCUa -3'
miRNA:   3'- -UCCCcCAGGUCUAUgC-------UGUUAGgAGG- -5'
27185 3' -53.8 NC_005832.1 + 31060 0.67 0.89374
Target:  5'- uGGGGuGGUucugccaugUCAGGUGCGucaaggccuacGCGGUCCUCa -3'
miRNA:   3'- -UCCC-CCA---------GGUCUAUGC-----------UGUUAGGAGg -5'
27185 3' -53.8 NC_005832.1 + 60418 0.67 0.89374
Target:  5'- cGuGGGG-CguG-UACGACuauGUCCUCCu -3'
miRNA:   3'- uC-CCCCaGguCuAUGCUGu--UAGGAGG- -5'
27185 3' -53.8 NC_005832.1 + 51133 0.67 0.89374
Target:  5'- aAGGGGGcCuCAGggAgGACcgGGUCCUaCCg -3'
miRNA:   3'- -UCCCCCaG-GUCuaUgCUG--UUAGGA-GG- -5'
27185 3' -53.8 NC_005832.1 + 27997 0.67 0.886776
Target:  5'- aAGGaGGUCCAGGgccugccCGGCcg-CCUCCu -3'
miRNA:   3'- -UCCcCCAGGUCUau-----GCUGuuaGGAGG- -5'
27185 3' -53.8 NC_005832.1 + 80662 0.67 0.886776
Target:  5'- ---uGGUCCG---ACGGCGGUCCUCCc -3'
miRNA:   3'- ucccCCAGGUcuaUGCUGUUAGGAGG- -5'
27185 3' -53.8 NC_005832.1 + 51983 0.67 0.886776
Target:  5'- -cGGGGUCCgugcccaagcucGGGUccACGGucAUCCUCCa -3'
miRNA:   3'- ucCCCCAGG------------UCUA--UGCUguUAGGAGG- -5'
27185 3' -53.8 NC_005832.1 + 7271 0.67 0.879573
Target:  5'- gAGGGuggcaaGGUCCuacGcgGCGGCGGUCCugugUCCg -3'
miRNA:   3'- -UCCC------CCAGGu--CuaUGCUGUUAGG----AGG- -5'
27185 3' -53.8 NC_005832.1 + 39447 0.67 0.878839
Target:  5'- gGGGGGGUcaugcuagacccgCCAGGUG-GACGuggaCUCCg -3'
miRNA:   3'- -UCCCCCA-------------GGUCUAUgCUGUuag-GAGG- -5'
27185 3' -53.8 NC_005832.1 + 1827 0.68 0.872134
Target:  5'- gGGGcGGGUgUAGGggucUACGcCGGUCCUCa -3'
miRNA:   3'- -UCC-CCCAgGUCU----AUGCuGUUAGGAGg -5'
27185 3' -53.8 NC_005832.1 + 54943 0.68 0.856576
Target:  5'- -cGGGGUCCAG----GACGGUCCcCCc -3'
miRNA:   3'- ucCCCCAGGUCuaugCUGUUAGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.