Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2719 | 5' | -51.1 | NC_001491.2 | + | 140562 | 1.13 | 0.004287 |
Target: 5'- gGGGAAAGCGUGAAUGACAGCGCCAUCa -3' miRNA: 3'- -CCCUUUCGCACUUACUGUCGCGGUAG- -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 82338 | 0.78 | 0.553155 |
Target: 5'- aGGGAuAGCGUGuccggGGguGCGCCGUUg -3' miRNA: 3'- -CCCUuUCGCACuua--CUguCGCGGUAG- -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 13922 | 0.74 | 0.732056 |
Target: 5'- gGGGcuGGCGgccuugGGcgGUGGCAGCGCCAg- -3' miRNA: 3'- -CCCuuUCGCa-----CU--UACUGUCGCGGUag -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 119086 | 0.72 | 0.853091 |
Target: 5'- gGGGAGAGCGUuagaGAAcggGGCgAGUGCCAa- -3' miRNA: 3'- -CCCUUUCGCA----CUUa--CUG-UCGCGGUag -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 122673 | 0.72 | 0.868944 |
Target: 5'- gGGGAuuGgGUG--UGAUGGCGCUGUCa -3' miRNA: 3'- -CCCUuuCgCACuuACUGUCGCGGUAG- -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 112575 | 0.7 | 0.916929 |
Target: 5'- gGGGggGGUGUG-GUGGuaaaUAGCGgCAUCc -3' miRNA: 3'- -CCCuuUCGCACuUACU----GUCGCgGUAG- -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 65468 | 0.7 | 0.916929 |
Target: 5'- cGGGGAAGCcccg--GGCAGUGCCAa- -3' miRNA: 3'- -CCCUUUCGcacuuaCUGUCGCGGUag -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 63885 | 0.69 | 0.938771 |
Target: 5'- -uGAGAGCGUGGAgcUGguuGCGGCGCUGUa -3' miRNA: 3'- ccCUUUCGCACUU--AC---UGUCGCGGUAg -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 122927 | 0.69 | 0.952464 |
Target: 5'- cGGGGAGCcguuGUGGacGUGGCcguacGCGCCGUCc -3' miRNA: 3'- cCCUUUCG----CACU--UACUGu----CGCGGUAG- -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 40211 | 0.68 | 0.967281 |
Target: 5'- cGGAAGacaCGUGuuUGGCGGCgGCUAUCg -3' miRNA: 3'- cCCUUUc--GCACuuACUGUCG-CGGUAG- -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 54415 | 0.68 | 0.970404 |
Target: 5'- aGGGGAGCGUGGacGUGACcacGCgGCUGUUg -3' miRNA: 3'- cCCUUUCGCACU--UACUGu--CG-CGGUAG- -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 92533 | 0.68 | 0.973308 |
Target: 5'- uGGGGuuuGCGaacaccgGAAccGACAGCGCCAa- -3' miRNA: 3'- -CCCUuu-CGCa------CUUa-CUGUCGCGGUag -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 83107 | 0.67 | 0.975215 |
Target: 5'- gGGGAgggugagguuacaaAAGCGUuuGAAUGACAGgGgCCuUCu -3' miRNA: 3'- -CCCU--------------UUCGCA--CUUACUGUCgC-GGuAG- -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 141237 | 0.67 | 0.978488 |
Target: 5'- gGGGAgGAGUGUGAcGUGAgCGGCGacgaGUCg -3' miRNA: 3'- -CCCU-UUCGCACU-UACU-GUCGCgg--UAG- -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 12265 | 0.67 | 0.980779 |
Target: 5'- aGGcAGGCGaGAAUGGcCAGCGUCAc- -3' miRNA: 3'- cCCuUUCGCaCUUACU-GUCGCGGUag -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 71354 | 0.66 | 0.986565 |
Target: 5'- uGGGAcGGGCGU---UGAcCAGacaGCCAUCg -3' miRNA: 3'- -CCCU-UUCGCAcuuACU-GUCg--CGGUAG- -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 146139 | 0.66 | 0.987541 |
Target: 5'- aGGAcccguguccgcgcgGAGCGUGGAUGAacuucuggcagaaCuGCGCCAg- -3' miRNA: 3'- cCCU--------------UUCGCACUUACU-------------GuCGCGGUag -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 58047 | 0.66 | 0.988008 |
Target: 5'- gGGGAAAGaggacucCGUGAuacugcuUGACgagaaacccgacGGCGCCAUUc -3' miRNA: 3'- -CCCUUUC-------GCACUu------ACUG------------UCGCGGUAG- -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 138516 | 0.66 | 0.988161 |
Target: 5'- cGGGAGAGUGcUGGGguccgcgcugcUGGCaucGGCGgCGUCg -3' miRNA: 3'- -CCCUUUCGC-ACUU-----------ACUG---UCGCgGUAG- -5' |
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2719 | 5' | -51.1 | NC_001491.2 | + | 10583 | 0.66 | 0.99208 |
Target: 5'- cGGGcaGAAGCGcau-UGACGGCaGCCAg- -3' miRNA: 3'- -CCC--UUUCGCacuuACUGUCG-CGGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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