miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27190 3' -57.1 NC_005832.1 + 3211 0.66 0.814845
Target:  5'- cGCCGuagucgucGGAUGcCUGAuGGCCUa-CGGGUa -3'
miRNA:   3'- -UGGU--------CCUGCaGACU-CCGGAaaGCCCG- -5'
27190 3' -57.1 NC_005832.1 + 73095 0.66 0.814845
Target:  5'- gGCCccgAGGACc-CUGGGGUCcgUCGGGa -3'
miRNA:   3'- -UGG---UCCUGcaGACUCCGGaaAGCCCg -5'
27190 3' -57.1 NC_005832.1 + 65691 0.66 0.80684
Target:  5'- cGCgGGGACGUCcacggaggacaaccaGAGGCUga--GGGCc -3'
miRNA:   3'- -UGgUCCUGCAGa--------------CUCCGGaaagCCCG- -5'
27190 3' -57.1 NC_005832.1 + 39770 0.66 0.805943
Target:  5'- aAUgAGGGgGUCUaGAGGCCcccCGGaGCg -3'
miRNA:   3'- -UGgUCCUgCAGA-CUCCGGaaaGCC-CG- -5'
27190 3' -57.1 NC_005832.1 + 26448 0.66 0.796878
Target:  5'- -aCAGGAC--CUGGGGagugUCGGGCa -3'
miRNA:   3'- ugGUCCUGcaGACUCCggaaAGCCCG- -5'
27190 3' -57.1 NC_005832.1 + 17758 0.66 0.78766
Target:  5'- gGCUGGGGC-UCUGGGGUUUUg-GGGUu -3'
miRNA:   3'- -UGGUCCUGcAGACUCCGGAAagCCCG- -5'
27190 3' -57.1 NC_005832.1 + 31954 0.66 0.778298
Target:  5'- --uGGGGCGcCcaccgcGAGGCCUUUCaGGCc -3'
miRNA:   3'- uggUCCUGCaGa-----CUCCGGAAAGcCCG- -5'
27190 3' -57.1 NC_005832.1 + 32195 0.66 0.768802
Target:  5'- gGCCuGGG-GUgUGGGGUCUgggaUUGGGCu -3'
miRNA:   3'- -UGGuCCUgCAgACUCCGGAa---AGCCCG- -5'
27190 3' -57.1 NC_005832.1 + 71298 0.66 0.768802
Target:  5'- gGCUcGGACGgcCUGAcGGCCUcUCcGGCa -3'
miRNA:   3'- -UGGuCCUGCa-GACU-CCGGAaAGcCCG- -5'
27190 3' -57.1 NC_005832.1 + 6509 0.67 0.749441
Target:  5'- -aCGGGGUGUCUGuGGCCcugugCGGGg -3'
miRNA:   3'- ugGUCCUGCAGACuCCGGaaa--GCCCg -5'
27190 3' -57.1 NC_005832.1 + 35995 0.67 0.739597
Target:  5'- cCCGGGGCGUUguAGuGCCUagaGGGCc -3'
miRNA:   3'- uGGUCCUGCAGacUC-CGGAaagCCCG- -5'
27190 3' -57.1 NC_005832.1 + 17581 0.67 0.718621
Target:  5'- cGCCAaGAUGUC--GGGCaacccggCUUUCGGGCa -3'
miRNA:   3'- -UGGUcCUGCAGacUCCG-------GAAAGCCCG- -5'
27190 3' -57.1 NC_005832.1 + 479 0.67 0.709524
Target:  5'- cCCAGGGCGgcgucCUGgucgGGGCCccugUGGGCc -3'
miRNA:   3'- uGGUCCUGCa----GAC----UCCGGaaa-GCCCG- -5'
27190 3' -57.1 NC_005832.1 + 94021 0.68 0.699351
Target:  5'- cGCCGGGACGa--GGGGCCgacaugcCGGGa -3'
miRNA:   3'- -UGGUCCUGCagaCUCCGGaaa----GCCCg -5'
27190 3' -57.1 NC_005832.1 + 32251 0.68 0.68912
Target:  5'- uCCAGGcACaag-GAGGCCUUUaGGGCc -3'
miRNA:   3'- uGGUCC-UGcagaCUCCGGAAAgCCCG- -5'
27190 3' -57.1 NC_005832.1 + 53923 0.68 0.68912
Target:  5'- --gGGGACGU---AGGCCUUUccccCGGGCg -3'
miRNA:   3'- uggUCCUGCAgacUCCGGAAA----GCCCG- -5'
27190 3' -57.1 NC_005832.1 + 77066 0.68 0.67678
Target:  5'- cCCAGucacCGUCUGAcgGGCCUggaagccgaguaUCGGGCa -3'
miRNA:   3'- uGGUCcu--GCAGACU--CCGGAa-----------AGCCCG- -5'
27190 3' -57.1 NC_005832.1 + 97407 0.68 0.668522
Target:  5'- gACCAGGGCcUC-GAGGCCggcCaGGCu -3'
miRNA:   3'- -UGGUCCUGcAGaCUCCGGaaaGcCCG- -5'
27190 3' -57.1 NC_005832.1 + 91880 0.69 0.616646
Target:  5'- gACCAGGACGUC--GGGCa---CGGGa -3'
miRNA:   3'- -UGGUCCUGCAGacUCCGgaaaGCCCg -5'
27190 3' -57.1 NC_005832.1 + 18899 0.69 0.609384
Target:  5'- gGCCAGGAUGUCUGuGGaggaagagagaaGGGCc -3'
miRNA:   3'- -UGGUCCUGCAGACuCCggaaag------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.