miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27191 5' -53.1 NC_005832.1 + 54891 0.66 0.957763
Target:  5'- aAAGUACcuGUCGAcGUCcgCCG-CCAGGc -3'
miRNA:   3'- gUUCAUG--CAGCUuCGGa-GGCuGGUCC- -5'
27191 5' -53.1 NC_005832.1 + 11103 0.66 0.953804
Target:  5'- aGAGUAggUGUUGAcGCCUUCGGCCu-- -3'
miRNA:   3'- gUUCAU--GCAGCUuCGGAGGCUGGucc -5'
27191 5' -53.1 NC_005832.1 + 94658 0.66 0.953804
Target:  5'- aGAGUcUGUCaccuuccaguAGCCUCCGGgCGGGa -3'
miRNA:   3'- gUUCAuGCAGcu--------UCGGAGGCUgGUCC- -5'
27191 5' -53.1 NC_005832.1 + 39107 0.66 0.949602
Target:  5'- cCAGGUucACGgucccCGAucccgAGCCUCCG-CCAGa -3'
miRNA:   3'- -GUUCA--UGCa----GCU-----UCGGAGGCuGGUCc -5'
27191 5' -53.1 NC_005832.1 + 47006 0.66 0.949168
Target:  5'- aGAGUACGagaggcugagcUCGGAGCugugggaccuggaCUCUgaGGCCAGGg -3'
miRNA:   3'- gUUCAUGC-----------AGCUUCG-------------GAGG--CUGGUCC- -5'
27191 5' -53.1 NC_005832.1 + 1858 0.66 0.945153
Target:  5'- gAGGUACGccUCGGAcGuCCUCCuaaacACCGGGg -3'
miRNA:   3'- gUUCAUGC--AGCUU-C-GGAGGc----UGGUCC- -5'
27191 5' -53.1 NC_005832.1 + 47678 0.67 0.935502
Target:  5'- cCGAGcACGUUGuAGCCggugaCGACCuGGg -3'
miRNA:   3'- -GUUCaUGCAGCuUCGGag---GCUGGuCC- -5'
27191 5' -53.1 NC_005832.1 + 42734 0.67 0.924277
Target:  5'- cCAGGUgcuccgcaGCGUCuccgccguGAAGaaagauuUCUCCGGCCAGGa -3'
miRNA:   3'- -GUUCA--------UGCAG--------CUUC-------GGAGGCUGGUCC- -5'
27191 5' -53.1 NC_005832.1 + 80160 0.67 0.919122
Target:  5'- aGAGUccuGCGUCcccgucauGAcGCCUCCauccgacugGACCAGGg -3'
miRNA:   3'- gUUCA---UGCAG--------CUuCGGAGG---------CUGGUCC- -5'
27191 5' -53.1 NC_005832.1 + 49181 0.67 0.913153
Target:  5'- gCGAGgACGUCGGAGCCguagcccaCGAaaGGGa -3'
miRNA:   3'- -GUUCaUGCAGCUUCGGag------GCUggUCC- -5'
27191 5' -53.1 NC_005832.1 + 43972 0.67 0.906932
Target:  5'- ---cUugGUUGAAGCCUCCcGCCGu- -3'
miRNA:   3'- guucAugCAGCUUCGGAGGcUGGUcc -5'
27191 5' -53.1 NC_005832.1 + 43961 0.67 0.906296
Target:  5'- aAAGUACGacagCGAGgugguguGCCUccCCGACUGGGg -3'
miRNA:   3'- gUUCAUGCa---GCUU-------CGGA--GGCUGGUCC- -5'
27191 5' -53.1 NC_005832.1 + 97679 0.68 0.879573
Target:  5'- cCAAGUACGcCucuGCCuuuUCCGACgGGGg -3'
miRNA:   3'- -GUUCAUGCaGcuuCGG---AGGCUGgUCC- -5'
27191 5' -53.1 NC_005832.1 + 54673 0.69 0.83931
Target:  5'- ---uUACGUCG-GGCCUgaggagcauccugUCGGCCAGGg -3'
miRNA:   3'- guucAUGCAGCuUCGGA-------------GGCUGGUCC- -5'
27191 5' -53.1 NC_005832.1 + 36045 0.71 0.727188
Target:  5'- aAAGUGCGUCGAGGgg-UgGGCCGGGu -3'
miRNA:   3'- gUUCAUGCAGCUUCggaGgCUGGUCC- -5'
27191 5' -53.1 NC_005832.1 + 15045 0.72 0.716967
Target:  5'- ----gGCGUUGucuCCUCCGGCCAGGc -3'
miRNA:   3'- guucaUGCAGCuucGGAGGCUGGUCC- -5'
27191 5' -53.1 NC_005832.1 + 627 0.72 0.696304
Target:  5'- -uGGUAC-UCGGcccacaggGGCC-CCGACCAGGa -3'
miRNA:   3'- guUCAUGcAGCU--------UCGGaGGCUGGUCC- -5'
27191 5' -53.1 NC_005832.1 + 59770 0.74 0.570133
Target:  5'- aGAGUuCGUCccccguaauGAAGCCUCCcGCCGGGu -3'
miRNA:   3'- gUUCAuGCAG---------CUUCGGAGGcUGGUCC- -5'
27191 5' -53.1 NC_005832.1 + 48710 1.1 0.003806
Target:  5'- gCAAGUACGUCGAAGCCUCCGACCAGGc -3'
miRNA:   3'- -GUUCAUGCAGCUUCGGAGGCUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.