miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27196 3' -59.5 NC_005832.1 + 93573 0.66 0.680511
Target:  5'- gCUUGuuuacGGuCAGGCCGCCUCCCGUg -3'
miRNA:   3'- aGGACccu--CC-GUUUGGUGGAGGGCGa -5'
27196 3' -59.5 NC_005832.1 + 11013 0.66 0.660026
Target:  5'- gUCaggGGGAgGGUGAGCUACCUCaaggCCGCc -3'
miRNA:   3'- -AGga-CCCU-CCGUUUGGUGGAG----GGCGa -5'
27196 3' -59.5 NC_005832.1 + 18654 0.66 0.646657
Target:  5'- cUCUUGGGccccgguuuaucgcAGGCAAagucagagaGCCACCUCaguuucaCGCUc -3'
miRNA:   3'- -AGGACCC--------------UCCGUU---------UGGUGGAGg------GCGA- -5'
27196 3' -59.5 NC_005832.1 + 6841 0.67 0.618851
Target:  5'- cCCUGGGguagugGGGgAGGCU-CCUCCUGCc -3'
miRNA:   3'- aGGACCC------UCCgUUUGGuGGAGGGCGa -5'
27196 3' -59.5 NC_005832.1 + 55727 0.67 0.608562
Target:  5'- -gCUGGGGcGGCGcuGACCGCCUCU-GCc -3'
miRNA:   3'- agGACCCU-CCGU--UUGGUGGAGGgCGa -5'
27196 3' -59.5 NC_005832.1 + 97166 0.67 0.608562
Target:  5'- -aCUGGGAGGcCAGGuCCGCCaCCaCGUa -3'
miRNA:   3'- agGACCCUCC-GUUU-GGUGGaGG-GCGa -5'
27196 3' -59.5 NC_005832.1 + 47630 0.67 0.608562
Target:  5'- -aCUGGGAgGGCGucguggcagugGACCugCUCCCu-- -3'
miRNA:   3'- agGACCCU-CCGU-----------UUGGugGAGGGcga -5'
27196 3' -59.5 NC_005832.1 + 65968 0.67 0.598291
Target:  5'- cCCUGGGAucGGUGGuCCugCUCCCu-- -3'
miRNA:   3'- aGGACCCU--CCGUUuGGugGAGGGcga -5'
27196 3' -59.5 NC_005832.1 + 5631 0.67 0.598291
Target:  5'- cCCUGGGcAGGguGACCagACC-CUCGUa -3'
miRNA:   3'- aGGACCC-UCCguUUGG--UGGaGGGCGa -5'
27196 3' -59.5 NC_005832.1 + 97029 0.67 0.577833
Target:  5'- gUCCUacGuGGuGGCGGACCugGCCUCCCaGUa -3'
miRNA:   3'- -AGGA--C-CCuCCGUUUGG--UGGAGGG-CGa -5'
27196 3' -59.5 NC_005832.1 + 32637 0.67 0.567659
Target:  5'- --gUGGGAGG-GAGCCAUUgcgCCCGCg -3'
miRNA:   3'- aggACCCUCCgUUUGGUGGa--GGGCGa -5'
27196 3' -59.5 NC_005832.1 + 40713 0.68 0.547456
Target:  5'- aCCgGGGuGGguAACUAgCCUUCCGCc -3'
miRNA:   3'- aGGaCCCuCCguUUGGU-GGAGGGCGa -5'
27196 3' -59.5 NC_005832.1 + 68046 0.68 0.517601
Target:  5'- aUCCUGGGAGGUuuucccccagAGACCccggcCCUCCUagaaaGCa -3'
miRNA:   3'- -AGGACCCUCCG----------UUUGGu----GGAGGG-----CGa -5'
27196 3' -59.5 NC_005832.1 + 66520 0.68 0.511707
Target:  5'- cCCaGGGAGGCc-GCCAgCCcccauccccucaaggUCCCGCUg -3'
miRNA:   3'- aGGaCCCUCCGuuUGGU-GG---------------AGGGCGA- -5'
27196 3' -59.5 NC_005832.1 + 67241 0.69 0.488417
Target:  5'- cCCUGGGAGaGgGGGCUGCCUCUCu-- -3'
miRNA:   3'- aGGACCCUC-CgUUUGGUGGAGGGcga -5'
27196 3' -59.5 NC_005832.1 + 96279 0.69 0.46003
Target:  5'- cCCUGGu-GGCAAuguGCCACC-CCUGCc -3'
miRNA:   3'- aGGACCcuCCGUU---UGGUGGaGGGCGa -5'
27196 3' -59.5 NC_005832.1 + 965 0.7 0.441599
Target:  5'- aCCUGGGGGaGCAGACgugCGCCUCggGCUu -3'
miRNA:   3'- aGGACCCUC-CGUUUG---GUGGAGggCGA- -5'
27196 3' -59.5 NC_005832.1 + 97507 0.7 0.432541
Target:  5'- uUCCUGGGcauGGCAAcCCAgCUCaaGCUc -3'
miRNA:   3'- -AGGACCCu--CCGUUuGGUgGAGggCGA- -5'
27196 3' -59.5 NC_005832.1 + 10945 0.71 0.388099
Target:  5'- -gCUGGGAGGCAccggcauGAcCCACCUCagGCUg -3'
miRNA:   3'- agGACCCUCCGU-------UU-GGUGGAGggCGA- -5'
27196 3' -59.5 NC_005832.1 + 5911 0.71 0.356201
Target:  5'- uUUCgacgGGGAcgagGGCAAccuCUACCUCCCGCa -3'
miRNA:   3'- -AGGa---CCCU----CCGUUu--GGUGGAGGGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.