miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27199 5' -52.6 NC_005832.1 + 90304 0.66 0.939982
Target:  5'- -gAGGacuuuaaGGGUCCaGUGGCCAAGCu -3'
miRNA:   3'- aaUCCguacg--CCUAGG-CACUGGUUUG- -5'
27199 5' -52.6 NC_005832.1 + 81160 0.66 0.92373
Target:  5'- -gGGGCcuUGCGGugCCGUGGCCccuGCc -3'
miRNA:   3'- aaUCCGu-ACGCCuaGGCACUGGuu-UG- -5'
27199 5' -52.6 NC_005832.1 + 38363 0.66 0.917769
Target:  5'- cUGGGCAUGCcaGA-CUGUGAguaCCAGGCu -3'
miRNA:   3'- aAUCCGUACGc-CUaGGCACU---GGUUUG- -5'
27199 5' -52.6 NC_005832.1 + 97144 0.67 0.911537
Target:  5'- -aAGGC-UGCGGcagacgCCGUGGCaaaGAGCc -3'
miRNA:   3'- aaUCCGuACGCCua----GGCACUGg--UUUG- -5'
27199 5' -52.6 NC_005832.1 + 37265 0.67 0.905036
Target:  5'- -aGGGCAUGUGG-UCCcUG-CUAGACu -3'
miRNA:   3'- aaUCCGUACGCCuAGGcACuGGUUUG- -5'
27199 5' -52.6 NC_005832.1 + 5616 0.67 0.905036
Target:  5'- --cGGCGgaCGGAUCUccccugggcaggGUGACCAGACc -3'
miRNA:   3'- aauCCGUacGCCUAGG------------CACUGGUUUG- -5'
27199 5' -52.6 NC_005832.1 + 92678 0.68 0.852309
Target:  5'- gUGGGCAUGUGcaucauggagcuGGUCa-UGACCAAGCu -3'
miRNA:   3'- aAUCCGUACGC------------CUAGgcACUGGUUUG- -5'
27199 5' -52.6 NC_005832.1 + 44396 0.68 0.852309
Target:  5'- -gGGGaCAUGCGGAgCCGUccuGACCcaggaGGACa -3'
miRNA:   3'- aaUCC-GUACGCCUaGGCA---CUGG-----UUUG- -5'
27199 5' -52.6 NC_005832.1 + 28034 0.68 0.843814
Target:  5'- -aGGGUAgUGgGGGUaCCGUGGCuCAGGCc -3'
miRNA:   3'- aaUCCGU-ACgCCUA-GGCACUG-GUUUG- -5'
27199 5' -52.6 NC_005832.1 + 94262 0.68 0.843813
Target:  5'- -aAGGCc-GCaGAgaCCGUGGCCAAGCa -3'
miRNA:   3'- aaUCCGuaCGcCUa-GGCACUGGUUUG- -5'
27199 5' -52.6 NC_005832.1 + 12936 0.69 0.826175
Target:  5'- aUGGGCAUaGCGGAcgCCccaaUGACCAuaGACu -3'
miRNA:   3'- aAUCCGUA-CGCCUa-GGc---ACUGGU--UUG- -5'
27199 5' -52.6 NC_005832.1 + 52009 0.71 0.721253
Target:  5'- gUGGGUcagacuccccguaaaGUGCucgGGGUCCGUGcCCAAGCu -3'
miRNA:   3'- aAUCCG---------------UACG---CCUAGGCACuGGUUUG- -5'
27199 5' -52.6 NC_005832.1 + 46428 0.72 0.663208
Target:  5'- gUGGGaCAagGCGGuggCCGUGGCCAAGg -3'
miRNA:   3'- aAUCC-GUa-CGCCua-GGCACUGGUUUg -5'
27199 5' -52.6 NC_005832.1 + 95135 0.73 0.565341
Target:  5'- gUGGGCA-GCGGGuUCCGUGcCCAAu- -3'
miRNA:   3'- aAUCCGUaCGCCU-AGGCACuGGUUug -5'
27199 5' -52.6 NC_005832.1 + 62259 1.08 0.003751
Target:  5'- cUUAGGCAUGCGGAUCCGUGACCAAACa -3'
miRNA:   3'- -AAUCCGUACGCCUAGGCACUGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.