miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27200 3' -57.8 NC_005832.1 + 39442 0.66 0.803863
Target:  5'- gGUCCGuGggaGCGGCugGGCCuCAGGgGCa -3'
miRNA:   3'- aCAGGCuCa--UGCUG--CCGG-GUCUgCGg -5'
27200 3' -57.8 NC_005832.1 + 72845 0.66 0.803863
Target:  5'- gGUCUGGGgccugaGCGcccucAgGGCCCAGACGgUg -3'
miRNA:   3'- aCAGGCUCa-----UGC-----UgCCGGGUCUGCgG- -5'
27200 3' -57.8 NC_005832.1 + 29907 0.66 0.803863
Target:  5'- gGUCUGGGgcggcggggGCGGCGGU--GGAgGCCa -3'
miRNA:   3'- aCAGGCUCa--------UGCUGCCGggUCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 29402 0.66 0.801191
Target:  5'- --cCCGAGUACGcucccaagaGGUuguuugaccccaggCCGGGCGCCg -3'
miRNA:   3'- acaGGCUCAUGCug-------CCG--------------GGUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 76661 0.66 0.797606
Target:  5'- gGUCagaGAGcGCGACgauaaggauguaccuGGCCauguuuuCAGACGCCu -3'
miRNA:   3'- aCAGg--CUCaUGCUG---------------CCGG-------GUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 13471 0.66 0.794902
Target:  5'- aGUgCaCGAGUACG-CGGugccccuguCCCAGAUgGCCg -3'
miRNA:   3'- aCA-G-GCUCAUGCuGCC---------GGGUCUG-CGG- -5'
27200 3' -57.8 NC_005832.1 + 90347 0.66 0.794902
Target:  5'- uUGUCCGGGUGCc-UGGCCUuggGGAUGggaCCa -3'
miRNA:   3'- -ACAGGCUCAUGcuGCCGGG---UCUGC---GG- -5'
27200 3' -57.8 NC_005832.1 + 49512 0.66 0.786712
Target:  5'- gGUCCGAGgaggucaggcgggacAUGGCGGCgC--ACGCCg -3'
miRNA:   3'- aCAGGCUCa--------------UGCUGCCGgGucUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 90307 0.66 0.785794
Target:  5'- --cCCGAGgACuuuaAgGGUCCAGugGCCa -3'
miRNA:   3'- acaGGCUCaUGc---UgCCGGGUCugCGG- -5'
27200 3' -57.8 NC_005832.1 + 64158 0.66 0.785794
Target:  5'- cGUCCuGAGgggugugACGAauGCCUAcGACGCa -3'
miRNA:   3'- aCAGG-CUCa------UGCUgcCGGGU-CUGCGg -5'
27200 3' -57.8 NC_005832.1 + 104105 0.66 0.785794
Target:  5'- cGUCC----GCGGCGGCCCucAGG-GCCa -3'
miRNA:   3'- aCAGGcucaUGCUGCCGGG--UCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 94029 0.66 0.776549
Target:  5'- gUGUUgGGG-AUGGCGGUCgCGGugGCg -3'
miRNA:   3'- -ACAGgCUCaUGCUGCCGG-GUCugCGg -5'
27200 3' -57.8 NC_005832.1 + 7955 0.66 0.776549
Target:  5'- --cCUGGGgcugGCGGCGGCCaaaaAGAgGCUu -3'
miRNA:   3'- acaGGCUCa---UGCUGCCGGg---UCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 31543 0.66 0.776549
Target:  5'- gUGUCU---UAUG-UGGCCCAGuGCGCCa -3'
miRNA:   3'- -ACAGGcucAUGCuGCCGGGUC-UGCGG- -5'
27200 3' -57.8 NC_005832.1 + 45824 0.66 0.775617
Target:  5'- cGUCCGucuUAUGACGGUaaaaagaggagguUCAGGgGCCa -3'
miRNA:   3'- aCAGGCuc-AUGCUGCCG-------------GGUCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 81005 0.66 0.757679
Target:  5'- gGUCCaaGAGUACGccuCGGCCUcccuGGUGCCc -3'
miRNA:   3'- aCAGG--CUCAUGCu--GCCGGGu---CUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 91360 0.67 0.748073
Target:  5'- cUGcCCGGGUugGCGGCGGUaaAGucguaGCGCCu -3'
miRNA:   3'- -ACaGGCUCA--UGCUGCCGggUC-----UGCGG- -5'
27200 3' -57.8 NC_005832.1 + 84421 0.67 0.72955
Target:  5'- cGUCUGGG-GCGGCGGgcuugacuacguucaCCCuccguuuuacggcaGGACGCCu -3'
miRNA:   3'- aCAGGCUCaUGCUGCC---------------GGG--------------UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 75767 0.67 0.728566
Target:  5'- gGUCCGcugcggGCGAgagguccauUGGUCUGGGCGCCa -3'
miRNA:   3'- aCAGGCuca---UGCU---------GCCGGGUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 72720 0.67 0.727581
Target:  5'- cGUCCac-UACGACGucgggacccugaaGCCCAGGgGCCc -3'
miRNA:   3'- aCAGGcucAUGCUGC-------------CGGGUCUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.