Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 2134 | 0.71 | 0.497363 |
Target: 5'- aGUCCGAGgGgGACagGGCCacgaccauGACGCCg -3' miRNA: 3'- aCAGGCUCaUgCUG--CCGGgu------CUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 96199 | 0.71 | 0.48779 |
Target: 5'- aGUCCGG---UGACGGCCCAcgacacGGCGCa -3' miRNA: 3'- aCAGGCUcauGCUGCCGGGU------CUGCGg -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 96513 | 0.71 | 0.478305 |
Target: 5'- gUGUUgGAG-AUGGCGGCCgacaGGGCGCUg -3' miRNA: 3'- -ACAGgCUCaUGCUGCCGGg---UCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 77112 | 0.72 | 0.423443 |
Target: 5'- gUGUaCGGGUACuacgaaagcuuuGGCGuCCCAGACGCCa -3' miRNA: 3'- -ACAgGCUCAUG------------CUGCcGGGUCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 92555 | 0.72 | 0.459614 |
Target: 5'- gGUCCGAGgacgcgacgGgGACGGCuCUGGGCuGCCu -3' miRNA: 3'- aCAGGCUCa--------UgCUGCCG-GGUCUG-CGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 17678 | 0.73 | 0.397462 |
Target: 5'- -aUCuCGAGagagcaauaUACGGgGGCUCGGACGCCa -3' miRNA: 3'- acAG-GCUC---------AUGCUgCCGGGUCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 39340 | 0.73 | 0.38072 |
Target: 5'- --cCCGGGgACGACGGCgaCCAGGgGCCc -3' miRNA: 3'- acaGGCUCaUGCUGCCG--GGUCUgCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 10886 | 0.73 | 0.413798 |
Target: 5'- aGUCCGAcgccUACGccuCGGCCUgggaccaGGACGCCg -3' miRNA: 3'- aCAGGCUc---AUGCu--GCCGGG-------UCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 4841 | 0.75 | 0.318608 |
Target: 5'- -cUCUGcGUGCGACgcguguggGGCCCAGAgGCCg -3' miRNA: 3'- acAGGCuCAUGCUG--------CCGGGUCUgCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 74433 | 0.76 | 0.252101 |
Target: 5'- gGUCCGuaaagaggcuaaAGUACcuGACgGGCCUGGACGCCg -3' miRNA: 3'- aCAGGC------------UCAUG--CUG-CCGGGUCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 64939 | 1.11 | 0.001055 |
Target: 5'- gUGUCCGAGUACGACGGCCCAGACGCCu -3' miRNA: 3'- -ACAGGCUCAUGCUGCCGGGUCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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