miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27200 3' -57.8 NC_005832.1 + 10029 0.69 0.617251
Target:  5'- cGU-CGGGcGCGuCGGCCgCGGAgGCCg -3'
miRNA:   3'- aCAgGCUCaUGCuGCCGG-GUCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 42854 0.69 0.637708
Target:  5'- cGUCCaGaAGgaagGCGAUaaggGGCCCGGugGCg -3'
miRNA:   3'- aCAGG-C-UCa---UGCUG----CCGGGUCugCGg -5'
27200 3' -57.8 NC_005832.1 + 67013 0.69 0.637708
Target:  5'- cGUCCcgcUGCGAgGGCCCuGGCGgCg -3'
miRNA:   3'- aCAGGcucAUGCUgCCGGGuCUGCgG- -5'
27200 3' -57.8 NC_005832.1 + 66762 0.68 0.647933
Target:  5'- cUGcCCGAGUacgucuaccACGAUGGgaCCGGugGCUc -3'
miRNA:   3'- -ACaGGCUCA---------UGCUGCCg-GGUCugCGG- -5'
27200 3' -57.8 NC_005832.1 + 77169 0.68 0.678501
Target:  5'- --aCCG---GCGAuCGGCCC-GACGCCg -3'
miRNA:   3'- acaGGCucaUGCU-GCCGGGuCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 24474 0.68 0.687615
Target:  5'- -cUUCGGG-ACGGuggaggcacgugcUGGCCaCAGACGCCg -3'
miRNA:   3'- acAGGCUCaUGCU-------------GCCGG-GUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 71313 0.68 0.688626
Target:  5'- uUGUCCca-UugGACgGGCUCGGACgGCCu -3'
miRNA:   3'- -ACAGGcucAugCUG-CCGGGUCUG-CGG- -5'
27200 3' -57.8 NC_005832.1 + 50914 0.67 0.698703
Target:  5'- gGUCC-AGUcaggcGCGugGGaCCCAGGgGCg -3'
miRNA:   3'- aCAGGcUCA-----UGCugCC-GGGUCUgCGg -5'
27200 3' -57.8 NC_005832.1 + 105382 0.67 0.698703
Target:  5'- gGUCaCGGGccaGACGGUCCAGACa-- -3'
miRNA:   3'- aCAG-GCUCaugCUGCCGGGUCUGcgg -5'
27200 3' -57.8 NC_005832.1 + 36262 0.67 0.708726
Target:  5'- uUGga-GAGgacccucGCGGCGGCCUcugcgacuauGGACGCCa -3'
miRNA:   3'- -ACaggCUCa------UGCUGCCGGG----------UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 41805 0.67 0.708726
Target:  5'- --aCCGugaGGUACGAgccccCGuGCCCAGACGgCa -3'
miRNA:   3'- acaGGC---UCAUGCU-----GC-CGGGUCUGCgG- -5'
27200 3' -57.8 NC_005832.1 + 72720 0.67 0.727581
Target:  5'- cGUCCac-UACGACGucgggacccugaaGCCCAGGgGCCc -3'
miRNA:   3'- aCAGGcucAUGCUGC-------------CGGGUCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 75767 0.67 0.728566
Target:  5'- gGUCCGcugcggGCGAgagguccauUGGUCUGGGCGCCa -3'
miRNA:   3'- aCAGGCuca---UGCU---------GCCGGGUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 84421 0.67 0.72955
Target:  5'- cGUCUGGG-GCGGCGGgcuugacuacguucaCCCuccguuuuacggcaGGACGCCu -3'
miRNA:   3'- aCAGGCUCaUGCUGCC---------------GGG--------------UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 91360 0.67 0.748073
Target:  5'- cUGcCCGGGUugGCGGCGGUaaAGucguaGCGCCu -3'
miRNA:   3'- -ACaGGCUCA--UGCUGCCGggUC-----UGCGG- -5'
27200 3' -57.8 NC_005832.1 + 81005 0.66 0.757679
Target:  5'- gGUCCaaGAGUACGccuCGGCCUcccuGGUGCCc -3'
miRNA:   3'- aCAGG--CUCAUGCu--GCCGGGu---CUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 45824 0.66 0.775617
Target:  5'- cGUCCGucuUAUGACGGUaaaaagaggagguUCAGGgGCCa -3'
miRNA:   3'- aCAGGCuc-AUGCUGCCG-------------GGUCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 94029 0.66 0.776549
Target:  5'- gUGUUgGGG-AUGGCGGUCgCGGugGCg -3'
miRNA:   3'- -ACAGgCUCaUGCUGCCGG-GUCugCGg -5'
27200 3' -57.8 NC_005832.1 + 31543 0.66 0.776549
Target:  5'- gUGUCU---UAUG-UGGCCCAGuGCGCCa -3'
miRNA:   3'- -ACAGGcucAUGCuGCCGGGUC-UGCGG- -5'
27200 3' -57.8 NC_005832.1 + 7955 0.66 0.776549
Target:  5'- --cCUGGGgcugGCGGCGGCCaaaaAGAgGCUu -3'
miRNA:   3'- acaGGCUCa---UGCUGCCGGg---UCUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.