Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 36262 | 0.67 | 0.708726 |
Target: 5'- uUGga-GAGgacccucGCGGCGGCCUcugcgacuauGGACGCCa -3' miRNA: 3'- -ACaggCUCa------UGCUGCCGGG----------UCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 41805 | 0.67 | 0.708726 |
Target: 5'- --aCCGugaGGUACGAgccccCGuGCCCAGACGgCa -3' miRNA: 3'- acaGGC---UCAUGCU-----GC-CGGGUCUGCgG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 50914 | 0.67 | 0.698703 |
Target: 5'- gGUCC-AGUcaggcGCGugGGaCCCAGGgGCg -3' miRNA: 3'- aCAGGcUCA-----UGCugCC-GGGUCUgCGg -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 105382 | 0.67 | 0.698703 |
Target: 5'- gGUCaCGGGccaGACGGUCCAGACa-- -3' miRNA: 3'- aCAG-GCUCaugCUGCCGGGUCUGcgg -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 71313 | 0.68 | 0.688626 |
Target: 5'- uUGUCCca-UugGACgGGCUCGGACgGCCu -3' miRNA: 3'- -ACAGGcucAugCUG-CCGGGUCUG-CGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 24474 | 0.68 | 0.687615 |
Target: 5'- -cUUCGGG-ACGGuggaggcacgugcUGGCCaCAGACGCCg -3' miRNA: 3'- acAGGCUCaUGCU-------------GCCGG-GUCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 77169 | 0.68 | 0.678501 |
Target: 5'- --aCCG---GCGAuCGGCCC-GACGCCg -3' miRNA: 3'- acaGGCucaUGCU-GCCGGGuCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 66762 | 0.68 | 0.647933 |
Target: 5'- cUGcCCGAGUacgucuaccACGAUGGgaCCGGugGCUc -3' miRNA: 3'- -ACaGGCUCA---------UGCUGCCg-GGUCugCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 42854 | 0.69 | 0.637708 |
Target: 5'- cGUCCaGaAGgaagGCGAUaaggGGCCCGGugGCg -3' miRNA: 3'- aCAGG-C-UCa---UGCUG----CCGGGUCugCGg -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 67013 | 0.69 | 0.637708 |
Target: 5'- cGUCCcgcUGCGAgGGCCCuGGCGgCg -3' miRNA: 3'- aCAGGcucAUGCUgCCGGGuCUGCgG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 81049 | 0.69 | 0.617251 |
Target: 5'- cGUCgGGGaccuUGACGGCCCAGucUGCUu -3' miRNA: 3'- aCAGgCUCau--GCUGCCGGGUCu-GCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 10029 | 0.69 | 0.617251 |
Target: 5'- cGU-CGGGcGCGuCGGCCgCGGAgGCCg -3' miRNA: 3'- aCAgGCUCaUGCuGCCGG-GUCUgCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 3191 | 0.69 | 0.606016 |
Target: 5'- -uUCCuGGGUAUGAuCGGCCUcgccguagucgucGGAUGCCu -3' miRNA: 3'- acAGG-CUCAUGCU-GCCGGG-------------UCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 23776 | 0.7 | 0.556382 |
Target: 5'- aGUCCGAcgcagauugccuGUACGcCGGCCUGccuuACGCCg -3' miRNA: 3'- aCAGGCU------------CAUGCuGCCGGGUc---UGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 56829 | 0.7 | 0.556382 |
Target: 5'- -cUCUGAGUgGCGACGGCCUucaugAGAcuCGCUa -3' miRNA: 3'- acAGGCUCA-UGCUGCCGGG-----UCU--GCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 46512 | 0.7 | 0.546382 |
Target: 5'- gGUCCGAGcACGGCGGUCagcuCGUCu -3' miRNA: 3'- aCAGGCUCaUGCUGCCGGgucuGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 103963 | 0.7 | 0.545385 |
Target: 5'- --cCCGAGgagAUGGUGGCCCugagggccgccgcGGACGCCg -3' miRNA: 3'- acaGGCUCa--UGCUGCCGGG-------------UCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 51871 | 0.7 | 0.53644 |
Target: 5'- --cCUGGGUAUggcucaGGCGGCCUuuGACGCCg -3' miRNA: 3'- acaGGCUCAUG------CUGCCGGGu-CUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 97053 | 0.7 | 0.53644 |
Target: 5'- -cUCCcAGUACGACGuGCUCGGAgGCa -3' miRNA: 3'- acAGGcUCAUGCUGC-CGGGUCUgCGg -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 86511 | 0.7 | 0.525578 |
Target: 5'- aG-CCGcuuGUGCGGCGGCCaagaacgaagccuUGGGCGCCu -3' miRNA: 3'- aCaGGCu--CAUGCUGCCGG-------------GUCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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