miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27200 3' -57.8 NC_005832.1 + 2134 0.71 0.497363
Target:  5'- aGUCCGAGgGgGACagGGCCacgaccauGACGCCg -3'
miRNA:   3'- aCAGGCUCaUgCUG--CCGGgu------CUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 96199 0.71 0.48779
Target:  5'- aGUCCGG---UGACGGCCCAcgacacGGCGCa -3'
miRNA:   3'- aCAGGCUcauGCUGCCGGGU------CUGCGg -5'
27200 3' -57.8 NC_005832.1 + 96513 0.71 0.478305
Target:  5'- gUGUUgGAG-AUGGCGGCCgacaGGGCGCUg -3'
miRNA:   3'- -ACAGgCUCaUGCUGCCGGg---UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 92555 0.72 0.459614
Target:  5'- gGUCCGAGgacgcgacgGgGACGGCuCUGGGCuGCCu -3'
miRNA:   3'- aCAGGCUCa--------UgCUGCCG-GGUCUG-CGG- -5'
27200 3' -57.8 NC_005832.1 + 77112 0.72 0.423443
Target:  5'- gUGUaCGGGUACuacgaaagcuuuGGCGuCCCAGACGCCa -3'
miRNA:   3'- -ACAgGCUCAUG------------CUGCcGGGUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 10886 0.73 0.413798
Target:  5'- aGUCCGAcgccUACGccuCGGCCUgggaccaGGACGCCg -3'
miRNA:   3'- aCAGGCUc---AUGCu--GCCGGG-------UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 17678 0.73 0.397462
Target:  5'- -aUCuCGAGagagcaauaUACGGgGGCUCGGACGCCa -3'
miRNA:   3'- acAG-GCUC---------AUGCUgCCGGGUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 39340 0.73 0.38072
Target:  5'- --cCCGGGgACGACGGCgaCCAGGgGCCc -3'
miRNA:   3'- acaGGCUCaUGCUGCCG--GGUCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 4841 0.75 0.318608
Target:  5'- -cUCUGcGUGCGACgcguguggGGCCCAGAgGCCg -3'
miRNA:   3'- acAGGCuCAUGCUG--------CCGGGUCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 74433 0.76 0.252101
Target:  5'- gGUCCGuaaagaggcuaaAGUACcuGACgGGCCUGGACGCCg -3'
miRNA:   3'- aCAGGC------------UCAUG--CUG-CCGGGUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 64939 1.11 0.001055
Target:  5'- gUGUCCGAGUACGACGGCCCAGACGCCu -3'
miRNA:   3'- -ACAGGCUCAUGCUGCCGGGUCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.