Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 2134 | 0.71 | 0.497363 |
Target: 5'- aGUCCGAGgGgGACagGGCCacgaccauGACGCCg -3' miRNA: 3'- aCAGGCUCaUgCUG--CCGGgu------CUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 3191 | 0.69 | 0.606016 |
Target: 5'- -uUCCuGGGUAUGAuCGGCCUcgccguagucgucGGAUGCCu -3' miRNA: 3'- acAGG-CUCAUGCU-GCCGGG-------------UCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 4841 | 0.75 | 0.318608 |
Target: 5'- -cUCUGcGUGCGACgcguguggGGCCCAGAgGCCg -3' miRNA: 3'- acAGGCuCAUGCUG--------CCGGGUCUgCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 7955 | 0.66 | 0.776549 |
Target: 5'- --cCUGGGgcugGCGGCGGCCaaaaAGAgGCUu -3' miRNA: 3'- acaGGCUCa---UGCUGCCGGg---UCUgCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 10029 | 0.69 | 0.617251 |
Target: 5'- cGU-CGGGcGCGuCGGCCgCGGAgGCCg -3' miRNA: 3'- aCAgGCUCaUGCuGCCGG-GUCUgCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 10886 | 0.73 | 0.413798 |
Target: 5'- aGUCCGAcgccUACGccuCGGCCUgggaccaGGACGCCg -3' miRNA: 3'- aCAGGCUc---AUGCu--GCCGGG-------UCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 13471 | 0.66 | 0.794902 |
Target: 5'- aGUgCaCGAGUACG-CGGugccccuguCCCAGAUgGCCg -3' miRNA: 3'- aCA-G-GCUCAUGCuGCC---------GGGUCUG-CGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 17678 | 0.73 | 0.397462 |
Target: 5'- -aUCuCGAGagagcaauaUACGGgGGCUCGGACGCCa -3' miRNA: 3'- acAG-GCUC---------AUGCUgCCGGGUCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 23776 | 0.7 | 0.556382 |
Target: 5'- aGUCCGAcgcagauugccuGUACGcCGGCCUGccuuACGCCg -3' miRNA: 3'- aCAGGCU------------CAUGCuGCCGGGUc---UGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 24474 | 0.68 | 0.687615 |
Target: 5'- -cUUCGGG-ACGGuggaggcacgugcUGGCCaCAGACGCCg -3' miRNA: 3'- acAGGCUCaUGCU-------------GCCGG-GUCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 29402 | 0.66 | 0.801191 |
Target: 5'- --cCCGAGUACGcucccaagaGGUuguuugaccccaggCCGGGCGCCg -3' miRNA: 3'- acaGGCUCAUGCug-------CCG--------------GGUCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 29907 | 0.66 | 0.803863 |
Target: 5'- gGUCUGGGgcggcggggGCGGCGGU--GGAgGCCa -3' miRNA: 3'- aCAGGCUCa--------UGCUGCCGggUCUgCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 31543 | 0.66 | 0.776549 |
Target: 5'- gUGUCU---UAUG-UGGCCCAGuGCGCCa -3' miRNA: 3'- -ACAGGcucAUGCuGCCGGGUC-UGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 36262 | 0.67 | 0.708726 |
Target: 5'- uUGga-GAGgacccucGCGGCGGCCUcugcgacuauGGACGCCa -3' miRNA: 3'- -ACaggCUCa------UGCUGCCGGG----------UCUGCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 39340 | 0.73 | 0.38072 |
Target: 5'- --cCCGGGgACGACGGCgaCCAGGgGCCc -3' miRNA: 3'- acaGGCUCaUGCUGCCG--GGUCUgCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 39442 | 0.66 | 0.803863 |
Target: 5'- gGUCCGuGggaGCGGCugGGCCuCAGGgGCa -3' miRNA: 3'- aCAGGCuCa--UGCUG--CCGG-GUCUgCGg -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 41805 | 0.67 | 0.708726 |
Target: 5'- --aCCGugaGGUACGAgccccCGuGCCCAGACGgCa -3' miRNA: 3'- acaGGC---UCAUGCU-----GC-CGGGUCUGCgG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 42854 | 0.69 | 0.637708 |
Target: 5'- cGUCCaGaAGgaagGCGAUaaggGGCCCGGugGCg -3' miRNA: 3'- aCAGG-C-UCa---UGCUG----CCGGGUCugCGg -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 45824 | 0.66 | 0.775617 |
Target: 5'- cGUCCGucuUAUGACGGUaaaaagaggagguUCAGGgGCCa -3' miRNA: 3'- aCAGGCuc-AUGCUGCCG-------------GGUCUgCGG- -5' |
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27200 | 3' | -57.8 | NC_005832.1 | + | 46512 | 0.7 | 0.546382 |
Target: 5'- gGUCCGAGcACGGCGGUCagcuCGUCu -3' miRNA: 3'- aCAGGCUCaUGCUGCCGGgucuGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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