miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27200 3' -57.8 NC_005832.1 + 49512 0.66 0.786712
Target:  5'- gGUCCGAGgaggucaggcgggacAUGGCGGCgC--ACGCCg -3'
miRNA:   3'- aCAGGCUCa--------------UGCUGCCGgGucUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 50914 0.67 0.698703
Target:  5'- gGUCC-AGUcaggcGCGugGGaCCCAGGgGCg -3'
miRNA:   3'- aCAGGcUCA-----UGCugCC-GGGUCUgCGg -5'
27200 3' -57.8 NC_005832.1 + 51871 0.7 0.53644
Target:  5'- --cCUGGGUAUggcucaGGCGGCCUuuGACGCCg -3'
miRNA:   3'- acaGGCUCAUG------CUGCCGGGu-CUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 56829 0.7 0.556382
Target:  5'- -cUCUGAGUgGCGACGGCCUucaugAGAcuCGCUa -3'
miRNA:   3'- acAGGCUCA-UGCUGCCGGG-----UCU--GCGG- -5'
27200 3' -57.8 NC_005832.1 + 64158 0.66 0.785794
Target:  5'- cGUCCuGAGgggugugACGAauGCCUAcGACGCa -3'
miRNA:   3'- aCAGG-CUCa------UGCUgcCGGGU-CUGCGg -5'
27200 3' -57.8 NC_005832.1 + 64939 1.11 0.001055
Target:  5'- gUGUCCGAGUACGACGGCCCAGACGCCu -3'
miRNA:   3'- -ACAGGCUCAUGCUGCCGGGUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 66762 0.68 0.647933
Target:  5'- cUGcCCGAGUacgucuaccACGAUGGgaCCGGugGCUc -3'
miRNA:   3'- -ACaGGCUCA---------UGCUGCCg-GGUCugCGG- -5'
27200 3' -57.8 NC_005832.1 + 67013 0.69 0.637708
Target:  5'- cGUCCcgcUGCGAgGGCCCuGGCGgCg -3'
miRNA:   3'- aCAGGcucAUGCUgCCGGGuCUGCgG- -5'
27200 3' -57.8 NC_005832.1 + 71313 0.68 0.688626
Target:  5'- uUGUCCca-UugGACgGGCUCGGACgGCCu -3'
miRNA:   3'- -ACAGGcucAugCUG-CCGGGUCUG-CGG- -5'
27200 3' -57.8 NC_005832.1 + 72720 0.67 0.727581
Target:  5'- cGUCCac-UACGACGucgggacccugaaGCCCAGGgGCCc -3'
miRNA:   3'- aCAGGcucAUGCUGC-------------CGGGUCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 72845 0.66 0.803863
Target:  5'- gGUCUGGGgccugaGCGcccucAgGGCCCAGACGgUg -3'
miRNA:   3'- aCAGGCUCa-----UGC-----UgCCGGGUCUGCgG- -5'
27200 3' -57.8 NC_005832.1 + 74433 0.76 0.252101
Target:  5'- gGUCCGuaaagaggcuaaAGUACcuGACgGGCCUGGACGCCg -3'
miRNA:   3'- aCAGGC------------UCAUG--CUG-CCGGGUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 75767 0.67 0.728566
Target:  5'- gGUCCGcugcggGCGAgagguccauUGGUCUGGGCGCCa -3'
miRNA:   3'- aCAGGCuca---UGCU---------GCCGGGUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 76661 0.66 0.797606
Target:  5'- gGUCagaGAGcGCGACgauaaggauguaccuGGCCauguuuuCAGACGCCu -3'
miRNA:   3'- aCAGg--CUCaUGCUG---------------CCGG-------GUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 77112 0.72 0.423443
Target:  5'- gUGUaCGGGUACuacgaaagcuuuGGCGuCCCAGACGCCa -3'
miRNA:   3'- -ACAgGCUCAUG------------CUGCcGGGUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 77169 0.68 0.678501
Target:  5'- --aCCG---GCGAuCGGCCC-GACGCCg -3'
miRNA:   3'- acaGGCucaUGCU-GCCGGGuCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 81005 0.66 0.757679
Target:  5'- gGUCCaaGAGUACGccuCGGCCUcccuGGUGCCc -3'
miRNA:   3'- aCAGG--CUCAUGCu--GCCGGGu---CUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 81049 0.69 0.617251
Target:  5'- cGUCgGGGaccuUGACGGCCCAGucUGCUu -3'
miRNA:   3'- aCAGgCUCau--GCUGCCGGGUCu-GCGG- -5'
27200 3' -57.8 NC_005832.1 + 84421 0.67 0.72955
Target:  5'- cGUCUGGG-GCGGCGGgcuugacuacguucaCCCuccguuuuacggcaGGACGCCu -3'
miRNA:   3'- aCAGGCUCaUGCUGCC---------------GGG--------------UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 86511 0.7 0.525578
Target:  5'- aG-CCGcuuGUGCGGCGGCCaagaacgaagccuUGGGCGCCu -3'
miRNA:   3'- aCaGGCu--CAUGCUGCCGG-------------GUCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.