miRNA display CGI


Results 41 - 51 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27200 3' -57.8 NC_005832.1 + 90307 0.66 0.785794
Target:  5'- --cCCGAGgACuuuaAgGGUCCAGugGCCa -3'
miRNA:   3'- acaGGCUCaUGc---UgCCGGGUCugCGG- -5'
27200 3' -57.8 NC_005832.1 + 90347 0.66 0.794902
Target:  5'- uUGUCCGGGUGCc-UGGCCUuggGGAUGggaCCa -3'
miRNA:   3'- -ACAGGCUCAUGcuGCCGGG---UCUGC---GG- -5'
27200 3' -57.8 NC_005832.1 + 91360 0.67 0.748073
Target:  5'- cUGcCCGGGUugGCGGCGGUaaAGucguaGCGCCu -3'
miRNA:   3'- -ACaGGCUCA--UGCUGCCGggUC-----UGCGG- -5'
27200 3' -57.8 NC_005832.1 + 92555 0.72 0.459614
Target:  5'- gGUCCGAGgacgcgacgGgGACGGCuCUGGGCuGCCu -3'
miRNA:   3'- aCAGGCUCa--------UgCUGCCG-GGUCUG-CGG- -5'
27200 3' -57.8 NC_005832.1 + 94029 0.66 0.776549
Target:  5'- gUGUUgGGG-AUGGCGGUCgCGGugGCg -3'
miRNA:   3'- -ACAGgCUCaUGCUGCCGG-GUCugCGg -5'
27200 3' -57.8 NC_005832.1 + 96199 0.71 0.48779
Target:  5'- aGUCCGG---UGACGGCCCAcgacacGGCGCa -3'
miRNA:   3'- aCAGGCUcauGCUGCCGGGU------CUGCGg -5'
27200 3' -57.8 NC_005832.1 + 96513 0.71 0.478305
Target:  5'- gUGUUgGAG-AUGGCGGCCgacaGGGCGCUg -3'
miRNA:   3'- -ACAGgCUCaUGCUGCCGGg---UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 97053 0.7 0.53644
Target:  5'- -cUCCcAGUACGACGuGCUCGGAgGCa -3'
miRNA:   3'- acAGGcUCAUGCUGC-CGGGUCUgCGg -5'
27200 3' -57.8 NC_005832.1 + 103963 0.7 0.545385
Target:  5'- --cCCGAGgagAUGGUGGCCCugagggccgccgcGGACGCCg -3'
miRNA:   3'- acaGGCUCa--UGCUGCCGGG-------------UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 104105 0.66 0.785794
Target:  5'- cGUCC----GCGGCGGCCCucAGG-GCCa -3'
miRNA:   3'- aCAGGcucaUGCUGCCGGG--UCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 105382 0.67 0.698703
Target:  5'- gGUCaCGGGccaGACGGUCCAGACa-- -3'
miRNA:   3'- aCAG-GCUCaugCUGCCGGGUCUGcgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.