miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27200 3' -57.8 NC_005832.1 + 105382 0.67 0.698703
Target:  5'- gGUCaCGGGccaGACGGUCCAGACa-- -3'
miRNA:   3'- aCAG-GCUCaugCUGCCGGGUCUGcgg -5'
27200 3' -57.8 NC_005832.1 + 104105 0.66 0.785794
Target:  5'- cGUCC----GCGGCGGCCCucAGG-GCCa -3'
miRNA:   3'- aCAGGcucaUGCUGCCGGG--UCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 103963 0.7 0.545385
Target:  5'- --cCCGAGgagAUGGUGGCCCugagggccgccgcGGACGCCg -3'
miRNA:   3'- acaGGCUCa--UGCUGCCGGG-------------UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 97053 0.7 0.53644
Target:  5'- -cUCCcAGUACGACGuGCUCGGAgGCa -3'
miRNA:   3'- acAGGcUCAUGCUGC-CGGGUCUgCGg -5'
27200 3' -57.8 NC_005832.1 + 96513 0.71 0.478305
Target:  5'- gUGUUgGAG-AUGGCGGCCgacaGGGCGCUg -3'
miRNA:   3'- -ACAGgCUCaUGCUGCCGGg---UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 96199 0.71 0.48779
Target:  5'- aGUCCGG---UGACGGCCCAcgacacGGCGCa -3'
miRNA:   3'- aCAGGCUcauGCUGCCGGGU------CUGCGg -5'
27200 3' -57.8 NC_005832.1 + 94029 0.66 0.776549
Target:  5'- gUGUUgGGG-AUGGCGGUCgCGGugGCg -3'
miRNA:   3'- -ACAGgCUCaUGCUGCCGG-GUCugCGg -5'
27200 3' -57.8 NC_005832.1 + 92555 0.72 0.459614
Target:  5'- gGUCCGAGgacgcgacgGgGACGGCuCUGGGCuGCCu -3'
miRNA:   3'- aCAGGCUCa--------UgCUGCCG-GGUCUG-CGG- -5'
27200 3' -57.8 NC_005832.1 + 91360 0.67 0.748073
Target:  5'- cUGcCCGGGUugGCGGCGGUaaAGucguaGCGCCu -3'
miRNA:   3'- -ACaGGCUCA--UGCUGCCGggUC-----UGCGG- -5'
27200 3' -57.8 NC_005832.1 + 90347 0.66 0.794902
Target:  5'- uUGUCCGGGUGCc-UGGCCUuggGGAUGggaCCa -3'
miRNA:   3'- -ACAGGCUCAUGcuGCCGGG---UCUGC---GG- -5'
27200 3' -57.8 NC_005832.1 + 90307 0.66 0.785794
Target:  5'- --cCCGAGgACuuuaAgGGUCCAGugGCCa -3'
miRNA:   3'- acaGGCUCaUGc---UgCCGGGUCugCGG- -5'
27200 3' -57.8 NC_005832.1 + 86511 0.7 0.525578
Target:  5'- aG-CCGcuuGUGCGGCGGCCaagaacgaagccuUGGGCGCCu -3'
miRNA:   3'- aCaGGCu--CAUGCUGCCGG-------------GUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 84421 0.67 0.72955
Target:  5'- cGUCUGGG-GCGGCGGgcuugacuacguucaCCCuccguuuuacggcaGGACGCCu -3'
miRNA:   3'- aCAGGCUCaUGCUGCC---------------GGG--------------UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 81049 0.69 0.617251
Target:  5'- cGUCgGGGaccuUGACGGCCCAGucUGCUu -3'
miRNA:   3'- aCAGgCUCau--GCUGCCGGGUCu-GCGG- -5'
27200 3' -57.8 NC_005832.1 + 81005 0.66 0.757679
Target:  5'- gGUCCaaGAGUACGccuCGGCCUcccuGGUGCCc -3'
miRNA:   3'- aCAGG--CUCAUGCu--GCCGGGu---CUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 77169 0.68 0.678501
Target:  5'- --aCCG---GCGAuCGGCCC-GACGCCg -3'
miRNA:   3'- acaGGCucaUGCU-GCCGGGuCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 77112 0.72 0.423443
Target:  5'- gUGUaCGGGUACuacgaaagcuuuGGCGuCCCAGACGCCa -3'
miRNA:   3'- -ACAgGCUCAUG------------CUGCcGGGUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 76661 0.66 0.797606
Target:  5'- gGUCagaGAGcGCGACgauaaggauguaccuGGCCauguuuuCAGACGCCu -3'
miRNA:   3'- aCAGg--CUCaUGCUG---------------CCGG-------GUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 75767 0.67 0.728566
Target:  5'- gGUCCGcugcggGCGAgagguccauUGGUCUGGGCGCCa -3'
miRNA:   3'- aCAGGCuca---UGCU---------GCCGGGUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 74433 0.76 0.252101
Target:  5'- gGUCCGuaaagaggcuaaAGUACcuGACgGGCCUGGACGCCg -3'
miRNA:   3'- aCAGGC------------UCAUG--CUG-CCGGGUCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.