Results 1 - 20 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 7955 | 0.66 | 0.776549 |
Target: 5'- --cCUGGGgcugGCGGCGGCCaaaaAGAgGCUu -3' miRNA: 3'- acaGGCUCa---UGCUGCCGGg---UCUgCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 77169 | 0.68 | 0.678501 |
Target: 5'- --aCCG---GCGAuCGGCCC-GACGCCg -3' miRNA: 3'- acaGGCucaUGCU-GCCGGGuCUGCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 105382 | 0.67 | 0.698703 |
Target: 5'- gGUCaCGGGccaGACGGUCCAGACa-- -3' miRNA: 3'- aCAG-GCUCaugCUGCCGGGUCUGcgg -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 36262 | 0.67 | 0.708726 |
Target: 5'- uUGga-GAGgacccucGCGGCGGCCUcugcgacuauGGACGCCa -3' miRNA: 3'- -ACaggCUCa------UGCUGCCGGG----------UCUGCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 41805 | 0.67 | 0.708726 |
Target: 5'- --aCCGugaGGUACGAgccccCGuGCCCAGACGgCa -3' miRNA: 3'- acaGGC---UCAUGCU-----GC-CGGGUCUGCgG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 75767 | 0.67 | 0.728566 |
Target: 5'- gGUCCGcugcggGCGAgagguccauUGGUCUGGGCGCCa -3' miRNA: 3'- aCAGGCuca---UGCU---------GCCGGGUCUGCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 84421 | 0.67 | 0.72955 |
Target: 5'- cGUCUGGG-GCGGCGGgcuugacuacguucaCCCuccguuuuacggcaGGACGCCu -3' miRNA: 3'- aCAGGCUCaUGCUGCC---------------GGG--------------UCUGCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 91360 | 0.67 | 0.748073 |
Target: 5'- cUGcCCGGGUugGCGGCGGUaaAGucguaGCGCCu -3' miRNA: 3'- -ACaGGCUCA--UGCUGCCGggUC-----UGCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 81005 | 0.66 | 0.757679 |
Target: 5'- gGUCCaaGAGUACGccuCGGCCUcccuGGUGCCc -3' miRNA: 3'- aCAGG--CUCAUGCu--GCCGGGu---CUGCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 66762 | 0.68 | 0.647933 |
Target: 5'- cUGcCCGAGUacgucuaccACGAUGGgaCCGGugGCUc -3' miRNA: 3'- -ACaGGCUCA---------UGCUGCCg-GGUCugCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 67013 | 0.69 | 0.637708 |
Target: 5'- cGUCCcgcUGCGAgGGCCCuGGCGgCg -3' miRNA: 3'- aCAGGcucAUGCUgCCGGGuCUGCgG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 3191 | 0.69 | 0.606016 |
Target: 5'- -uUCCuGGGUAUGAuCGGCCUcgccguagucgucGGAUGCCu -3' miRNA: 3'- acAGG-CUCAUGCU-GCCGGG-------------UCUGCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 74433 | 0.76 | 0.252101 |
Target: 5'- gGUCCGuaaagaggcuaaAGUACcuGACgGGCCUGGACGCCg -3' miRNA: 3'- aCAGGC------------UCAUG--CUG-CCGGGUCUGCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 4841 | 0.75 | 0.318608 |
Target: 5'- -cUCUGcGUGCGACgcguguggGGCCCAGAgGCCg -3' miRNA: 3'- acAGGCuCAUGCUG--------CCGGGUCUgCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 39340 | 0.73 | 0.38072 |
Target: 5'- --cCCGGGgACGACGGCgaCCAGGgGCCc -3' miRNA: 3'- acaGGCUCaUGCUGCCG--GGUCUgCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 77112 | 0.72 | 0.423443 |
Target: 5'- gUGUaCGGGUACuacgaaagcuuuGGCGuCCCAGACGCCa -3' miRNA: 3'- -ACAgGCUCAUG------------CUGCcGGGUCUGCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 86511 | 0.7 | 0.525578 |
Target: 5'- aG-CCGcuuGUGCGGCGGCCaagaacgaagccuUGGGCGCCu -3' miRNA: 3'- aCaGGCu--CAUGCUGCCGG-------------GUCUGCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 97053 | 0.7 | 0.53644 |
Target: 5'- -cUCCcAGUACGACGuGCUCGGAgGCa -3' miRNA: 3'- acAGGcUCAUGCUGC-CGGGUCUgCGg -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 103963 | 0.7 | 0.545385 |
Target: 5'- --cCCGAGgagAUGGUGGCCCugagggccgccgcGGACGCCg -3' miRNA: 3'- acaGGCUCa--UGCUGCCGGG-------------UCUGCGG- -5' |
|||||||
27200 | 3' | -57.8 | NC_005832.1 | + | 56829 | 0.7 | 0.556382 |
Target: 5'- -cUCUGAGUgGCGACGGCCUucaugAGAcuCGCUa -3' miRNA: 3'- acAGGCUCA-UGCUGCCGGG-----UCU--GCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home