miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27200 3' -57.8 NC_005832.1 + 97053 0.7 0.53644
Target:  5'- -cUCCcAGUACGACGuGCUCGGAgGCa -3'
miRNA:   3'- acAGGcUCAUGCUGC-CGGGUCUgCGg -5'
27200 3' -57.8 NC_005832.1 + 103963 0.7 0.545385
Target:  5'- --cCCGAGgagAUGGUGGCCCugagggccgccgcGGACGCCg -3'
miRNA:   3'- acaGGCUCa--UGCUGCCGGG-------------UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 56829 0.7 0.556382
Target:  5'- -cUCUGAGUgGCGACGGCCUucaugAGAcuCGCUa -3'
miRNA:   3'- acAGGCUCA-UGCUGCCGGG-----UCU--GCGG- -5'
27200 3' -57.8 NC_005832.1 + 3191 0.69 0.606016
Target:  5'- -uUCCuGGGUAUGAuCGGCCUcgccguagucgucGGAUGCCu -3'
miRNA:   3'- acAGG-CUCAUGCU-GCCGGG-------------UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 67013 0.69 0.637708
Target:  5'- cGUCCcgcUGCGAgGGCCCuGGCGgCg -3'
miRNA:   3'- aCAGGcucAUGCUgCCGGGuCUGCgG- -5'
27200 3' -57.8 NC_005832.1 + 66762 0.68 0.647933
Target:  5'- cUGcCCGAGUacgucuaccACGAUGGgaCCGGugGCUc -3'
miRNA:   3'- -ACaGGCUCA---------UGCUGCCg-GGUCugCGG- -5'
27200 3' -57.8 NC_005832.1 + 23776 0.7 0.556382
Target:  5'- aGUCCGAcgcagauugccuGUACGcCGGCCUGccuuACGCCg -3'
miRNA:   3'- aCAGGCU------------CAUGCuGCCGGGUc---UGCGG- -5'
27200 3' -57.8 NC_005832.1 + 10029 0.69 0.617251
Target:  5'- cGU-CGGGcGCGuCGGCCgCGGAgGCCg -3'
miRNA:   3'- aCAgGCUCaUGCuGCCGG-GUCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 81049 0.69 0.617251
Target:  5'- cGUCgGGGaccuUGACGGCCCAGucUGCUu -3'
miRNA:   3'- aCAGgCUCau--GCUGCCGGGUCu-GCGG- -5'
27200 3' -57.8 NC_005832.1 + 42854 0.69 0.637708
Target:  5'- cGUCCaGaAGgaagGCGAUaaggGGCCCGGugGCg -3'
miRNA:   3'- aCAGG-C-UCa---UGCUG----CCGGGUCugCGg -5'
27200 3' -57.8 NC_005832.1 + 24474 0.68 0.687615
Target:  5'- -cUUCGGG-ACGGuggaggcacgugcUGGCCaCAGACGCCg -3'
miRNA:   3'- acAGGCUCaUGCU-------------GCCGG-GUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 71313 0.68 0.688626
Target:  5'- uUGUCCca-UugGACgGGCUCGGACgGCCu -3'
miRNA:   3'- -ACAGGcucAugCUG-CCGGGUCUG-CGG- -5'
27200 3' -57.8 NC_005832.1 + 46512 0.7 0.546382
Target:  5'- gGUCCGAGcACGGCGGUCagcuCGUCu -3'
miRNA:   3'- aCAGGCUCaUGCUGCCGGgucuGCGG- -5'
27200 3' -57.8 NC_005832.1 + 51871 0.7 0.53644
Target:  5'- --cCUGGGUAUggcucaGGCGGCCUuuGACGCCg -3'
miRNA:   3'- acaGGCUCAUG------CUGCCGGGu-CUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 2134 0.71 0.497363
Target:  5'- aGUCCGAGgGgGACagGGCCacgaccauGACGCCg -3'
miRNA:   3'- aCAGGCUCaUgCUG--CCGGgu------CUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 96199 0.71 0.48779
Target:  5'- aGUCCGG---UGACGGCCCAcgacacGGCGCa -3'
miRNA:   3'- aCAGGCUcauGCUGCCGGGU------CUGCGg -5'
27200 3' -57.8 NC_005832.1 + 96513 0.71 0.478305
Target:  5'- gUGUUgGAG-AUGGCGGCCgacaGGGCGCUg -3'
miRNA:   3'- -ACAGgCUCaUGCUGCCGGg---UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 92555 0.72 0.459614
Target:  5'- gGUCCGAGgacgcgacgGgGACGGCuCUGGGCuGCCu -3'
miRNA:   3'- aCAGGCUCa--------UgCUGCCG-GGUCUG-CGG- -5'
27200 3' -57.8 NC_005832.1 + 10886 0.73 0.413798
Target:  5'- aGUCCGAcgccUACGccuCGGCCUgggaccaGGACGCCg -3'
miRNA:   3'- aCAGGCUc---AUGCu--GCCGGG-------UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 29907 0.66 0.803863
Target:  5'- gGUCUGGGgcggcggggGCGGCGGU--GGAgGCCa -3'
miRNA:   3'- aCAGGCUCa--------UGCUGCCGggUCUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.