miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27200 3' -57.8 NC_005832.1 + 17678 0.73 0.397462
Target:  5'- -aUCuCGAGagagcaauaUACGGgGGCUCGGACGCCa -3'
miRNA:   3'- acAG-GCUC---------AUGCUgCCGGGUCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 31543 0.66 0.776549
Target:  5'- gUGUCU---UAUG-UGGCCCAGuGCGCCa -3'
miRNA:   3'- -ACAGGcucAUGCuGCCGGGUC-UGCGG- -5'
27200 3' -57.8 NC_005832.1 + 104105 0.66 0.785794
Target:  5'- cGUCC----GCGGCGGCCCucAGG-GCCa -3'
miRNA:   3'- aCAGGcucaUGCUGCCGGG--UCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 29907 0.66 0.803863
Target:  5'- gGUCUGGGgcggcggggGCGGCGGU--GGAgGCCa -3'
miRNA:   3'- aCAGGCUCa--------UGCUGCCGggUCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 96199 0.71 0.48779
Target:  5'- aGUCCGG---UGACGGCCCAcgacacGGCGCa -3'
miRNA:   3'- aCAGGCUcauGCUGCCGGGU------CUGCGg -5'
27200 3' -57.8 NC_005832.1 + 2134 0.71 0.497363
Target:  5'- aGUCCGAGgGgGACagGGCCacgaccauGACGCCg -3'
miRNA:   3'- aCAGGCUCaUgCUG--CCGGgu------CUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 46512 0.7 0.546382
Target:  5'- gGUCCGAGcACGGCGGUCagcuCGUCu -3'
miRNA:   3'- aCAGGCUCaUGCUGCCGGgucuGCGG- -5'
27200 3' -57.8 NC_005832.1 + 23776 0.7 0.556382
Target:  5'- aGUCCGAcgcagauugccuGUACGcCGGCCUGccuuACGCCg -3'
miRNA:   3'- aCAGGCU------------CAUGCuGCCGGGUc---UGCGG- -5'
27200 3' -57.8 NC_005832.1 + 42854 0.69 0.637708
Target:  5'- cGUCCaGaAGgaagGCGAUaaggGGCCCGGugGCg -3'
miRNA:   3'- aCAGG-C-UCa---UGCUG----CCGGGUCugCGg -5'
27200 3' -57.8 NC_005832.1 + 45824 0.66 0.775617
Target:  5'- cGUCCGucuUAUGACGGUaaaaagaggagguUCAGGgGCCa -3'
miRNA:   3'- aCAGGCuc-AUGCUGCCG-------------GGUCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 71313 0.68 0.688626
Target:  5'- uUGUCCca-UugGACgGGCUCGGACgGCCu -3'
miRNA:   3'- -ACAGGcucAugCUG-CCGGGUCUG-CGG- -5'
27200 3' -57.8 NC_005832.1 + 81049 0.69 0.617251
Target:  5'- cGUCgGGGaccuUGACGGCCCAGucUGCUu -3'
miRNA:   3'- aCAGgCUCau--GCUGCCGGGUCu-GCGG- -5'
27200 3' -57.8 NC_005832.1 + 10886 0.73 0.413798
Target:  5'- aGUCCGAcgccUACGccuCGGCCUgggaccaGGACGCCg -3'
miRNA:   3'- aCAGGCUc---AUGCu--GCCGGG-------UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 50914 0.67 0.698703
Target:  5'- gGUCC-AGUcaggcGCGugGGaCCCAGGgGCg -3'
miRNA:   3'- aCAGGcUCA-----UGCugCC-GGGUCUgCGg -5'
27200 3' -57.8 NC_005832.1 + 92555 0.72 0.459614
Target:  5'- gGUCCGAGgacgcgacgGgGACGGCuCUGGGCuGCCu -3'
miRNA:   3'- aCAGGCUCa--------UgCUGCCG-GGUCUG-CGG- -5'
27200 3' -57.8 NC_005832.1 + 10029 0.69 0.617251
Target:  5'- cGU-CGGGcGCGuCGGCCgCGGAgGCCg -3'
miRNA:   3'- aCAgGCUCaUGCuGCCGG-GUCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 72720 0.67 0.727581
Target:  5'- cGUCCac-UACGACGucgggacccugaaGCCCAGGgGCCc -3'
miRNA:   3'- aCAGGcucAUGCUGC-------------CGGGUCUgCGG- -5'
27200 3' -57.8 NC_005832.1 + 94029 0.66 0.776549
Target:  5'- gUGUUgGGG-AUGGCGGUCgCGGugGCg -3'
miRNA:   3'- -ACAGgCUCaUGCUGCCGG-GUCugCGg -5'
27200 3' -57.8 NC_005832.1 + 96513 0.71 0.478305
Target:  5'- gUGUUgGAG-AUGGCGGCCgacaGGGCGCUg -3'
miRNA:   3'- -ACAGgCUCaUGCUGCCGGg---UCUGCGG- -5'
27200 3' -57.8 NC_005832.1 + 51871 0.7 0.53644
Target:  5'- --cCUGGGUAUggcucaGGCGGCCUuuGACGCCg -3'
miRNA:   3'- acaGGCUCAUG------CUGCCGGGu-CUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.