miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27201 3' -52 NC_005832.1 + 32947 0.66 0.969294
Target:  5'- ---cGAgGCCCAucAGGaaCUGGACg -3'
miRNA:   3'- guauCUgCGGGUuuUCCagGACCUGg -5'
27201 3' -52 NC_005832.1 + 54732 0.66 0.969294
Target:  5'- ---cGACGCCUgcGAGAGGaccggCCUGuGCCu -3'
miRNA:   3'- guauCUGCGGG--UUUUCCa----GGACcUGG- -5'
27201 3' -52 NC_005832.1 + 38440 0.66 0.969294
Target:  5'- gAUGGACugcuccacccuGCCCGGGcuagccAGGUCCcuccuuaGGGCCg -3'
miRNA:   3'- gUAUCUG-----------CGGGUUU------UCCAGGa------CCUGG- -5'
27201 3' -52 NC_005832.1 + 56377 0.66 0.969294
Target:  5'- --cAGAgGCCagGAGGGGUCCuaUGGcCCu -3'
miRNA:   3'- guaUCUgCGGg-UUUUCCAGG--ACCuGG- -5'
27201 3' -52 NC_005832.1 + 54443 0.66 0.968346
Target:  5'- aCAUAGA-GCCCGAGuuuagcaagaccacGGGUaagaUGGACUg -3'
miRNA:   3'- -GUAUCUgCGGGUUU--------------UCCAgg--ACCUGG- -5'
27201 3' -52 NC_005832.1 + 87761 0.66 0.966054
Target:  5'- --aAGAcauccCGUCCugcGGGG-CCUGGACCu -3'
miRNA:   3'- guaUCU-----GCGGGuu-UUCCaGGACCUGG- -5'
27201 3' -52 NC_005832.1 + 39821 0.66 0.966054
Target:  5'- --gGGGCGCCUGGAucuuaGGGUUC-GGACg -3'
miRNA:   3'- guaUCUGCGGGUUU-----UCCAGGaCCUGg -5'
27201 3' -52 NC_005832.1 + 97192 0.66 0.966054
Target:  5'- --aAGAaGCUCGAcAGGcUCCUGGAgCa -3'
miRNA:   3'- guaUCUgCGGGUUuUCC-AGGACCUgG- -5'
27201 3' -52 NC_005832.1 + 54216 0.66 0.966054
Target:  5'- -cUAGA-GUCCGGAAGGaaCCUGG-CCg -3'
miRNA:   3'- guAUCUgCGGGUUUUCCa-GGACCuGG- -5'
27201 3' -52 NC_005832.1 + 75796 0.66 0.96258
Target:  5'- -cUGGGCGCCau---GGg-CUGGGCCa -3'
miRNA:   3'- guAUCUGCGGguuuuCCagGACCUGG- -5'
27201 3' -52 NC_005832.1 + 39728 0.66 0.96258
Target:  5'- --cAGAgGUCCGGcAGGUCCcagGGGuCCa -3'
miRNA:   3'- guaUCUgCGGGUUuUCCAGGa--CCU-GG- -5'
27201 3' -52 NC_005832.1 + 39528 0.66 0.958866
Target:  5'- --cGGAUGgaCCAAAGGGUCCaucUGGuucgGCCg -3'
miRNA:   3'- guaUCUGCg-GGUUUUCCAGG---ACC----UGG- -5'
27201 3' -52 NC_005832.1 + 38598 0.66 0.958866
Target:  5'- --aGGACgGCCCuaagGAGGGaCCUGGcuaGCCc -3'
miRNA:   3'- guaUCUG-CGGGu---UUUCCaGGACC---UGG- -5'
27201 3' -52 NC_005832.1 + 39689 0.66 0.958866
Target:  5'- ---cGAcuCGUCCAAGguGGGUCCUGugggaGACCa -3'
miRNA:   3'- guauCU--GCGGGUUU--UCCAGGAC-----CUGG- -5'
27201 3' -52 NC_005832.1 + 12729 0.66 0.958866
Target:  5'- --gGGuuuCGCCguGGAGGUCCguguaGACCa -3'
miRNA:   3'- guaUCu--GCGGguUUUCCAGGac---CUGG- -5'
27201 3' -52 NC_005832.1 + 4999 0.66 0.958866
Target:  5'- ---uGACGUggAcAGGGUCCUGGGCa -3'
miRNA:   3'- guauCUGCGggUuUUCCAGGACCUGg -5'
27201 3' -52 NC_005832.1 + 26582 0.66 0.954907
Target:  5'- gGUGGcUGCCCGAcacuccccAGGUCCUGucCCu -3'
miRNA:   3'- gUAUCuGCGGGUUu-------UCCAGGACcuGG- -5'
27201 3' -52 NC_005832.1 + 36200 0.66 0.954907
Target:  5'- uCGUGGuccaGCCCAGGAGcGUCCacccGGcCCa -3'
miRNA:   3'- -GUAUCug--CGGGUUUUC-CAGGa---CCuGG- -5'
27201 3' -52 NC_005832.1 + 42507 0.66 0.954907
Target:  5'- --aAGACGCCgAucGGG-CCUcuguggaagaGGACCg -3'
miRNA:   3'- guaUCUGCGGgUuuUCCaGGA----------CCUGG- -5'
27201 3' -52 NC_005832.1 + 7526 0.67 0.950697
Target:  5'- gGUGGGgugcuCGUucgUCAGGAGGgaccUCCUGGACCu -3'
miRNA:   3'- gUAUCU-----GCG---GGUUUUCC----AGGACCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.